Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O13
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   129   1e-31
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   128   3e-31
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   2.0  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   4.7  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    24   6.2  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    24   8.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      24   8.2  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  129 bits (311), Expect = 1e-31
 Identities = 58/114 (50%), Positives = 77/114 (67%)
 Frame = +1

Query: 10  DVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIR 189
           DV+  K +   AA LK+ GK+  P  +D+VKT   KELAPYDPDW+YVR AAI RHIY+R
Sbjct: 8   DVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLR 67

Query: 190 SPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGGR 351
             VGV  + K++GG    G+ PSH    SGS+ RK +Q+LE + ++EK  +GGR
Sbjct: 68  KQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGR 121


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  128 bits (308), Expect = 3e-31
 Identities = 57/114 (50%), Positives = 77/114 (67%)
 Frame = +1

Query: 10  DVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIR 189
           DV+  + +   AA LK+ GK+  P  +D+VKT   KELAPYDPDW+YVR AAI RHIY+R
Sbjct: 8   DVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLR 67

Query: 190 SPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGGR 351
             VGV  + K++GG    G+ PSH    SGS+ RK +Q+LE + ++EK  +GGR
Sbjct: 68  KQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGR 121


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 211 QS*LQQESGYRCDAV*QHSVHKTNQGHR 128
           QS  +++SGY  D V   S H+T + HR
Sbjct: 90  QSFQREDSGYNDDVVTNSSSHRTPRHHR 117


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +1

Query: 49  HLKKIGKVKVPDHMDLVKTAR--FKELAPYDPDWFYVRCAAILRHIYI 186
           H K   K   P H D  KT+R   KE  P  P   Y R  +  R  YI
Sbjct: 627 HAKSFSKYYSPSHKDSNKTSRNTSKEGLPSSPTMLY-RTTSNTRGDYI 673


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 83  IIWTW*RQLVSRNWL 127
           I W+W  QL++R W+
Sbjct: 177 ISWSWLLQLIARTWM 191


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 166 ILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKA 297
           ++R+    S +G +++    GG    GVTPSH    S   A +A
Sbjct: 389 LMRNREQSSLLGQESIPLQPGGTGYTGVTPSHAANGSALAAPQA 432


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 4   RGDVEQDKIVKTVAAHLKKIGKVKVPD-HMD 93
           RGDV + K+ KT+   L +I KV V D H+D
Sbjct: 908 RGDVREVKLWKTI---LGRIHKVLVADNHLD 935


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,413,173
Number of Sequences: 5004
Number of extensions: 25610
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)