Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O13
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   142   1e-34
11_01_0645 + 5185341-5185568,5185773-5185823                           27   3.4  
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815...    27   4.4  
11_06_0513 + 24466131-24469487                                         27   5.9  
04_04_0901 - 29247518-29247634,29248990-29250273                       26   7.7  
03_03_0116 - 14572258-14572881,14573026-14573127,14573253-145733...    26   7.7  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  142 bits (343), Expect = 1e-34
 Identities = 61/117 (52%), Positives = 86/117 (73%)
 Frame = +1

Query: 10  DVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIR 189
           DV   + VK  +AHLK+ GK+++P+ +D+VKTARFKEL PYDPDW+Y R A+I R IY+R
Sbjct: 11  DVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLR 70

Query: 190 SPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALEALKLVEKVQDGGRILT 360
             +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++    GGR++T
Sbjct: 71  QGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLIT 127


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 178 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 294
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>01_06_0213 +
           27580635-27581105,27581206-27581298,27581376-27581540,
           27581640-27581862,27582329-27582429,27582666-27582713,
           27583086-27583172,27583745-27583879,27583985-27584140,
           27585336-27585545,27585641-27586351,27586429-27586974,
           27587872-27588495,27588595-27588699,27590460-27590711,
           27590939-27591766
          Length = 1584

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 102 LYQVHMIW--NLHFADLFQVSGYSFDDFV 22
           L  +H +W  ++ FAD+  +S  +FD+FV
Sbjct: 362 LASLHQVWKFSITFADVLGLSSVTFDEFV 390


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 163 AILRHIYIRSPVGVKTVTKIFGGRKRN-GVTPSHFCRSSGSIARKALQALEALKLVEKVQ 339
           ++  H  +R+ + ++T   +  G+K      PS +CR    +    LQA +  KL EKV+
Sbjct: 578 SLTAHTDLRTLILLRTQKMVLSGQKSEIKEIPSDYCRYLTYLRVLDLQATKINKLPEKVE 637


>04_04_0901 - 29247518-29247634,29248990-29250273
          Length = 466

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 1   ARGDVEQDKIVKTVAAHLKKIGK-VKVPD 84
           +RGDVEQ  +   VAA   +IG+   VPD
Sbjct: 293 SRGDVEQRLVAMMVAALSSRIGQTASVPD 321


>03_03_0116 -
           14572258-14572881,14573026-14573127,14573253-14573345,
           14573445-14573591,14573690-14573780,14573873-14573961,
           14574061-14574126,14574241-14574762
          Length = 577

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 51  LEKDRQSEGSRSYGLGKDSSFQGT 122
           LE+    +G RSY LGK  SF+ T
Sbjct: 475 LERINSKKGMRSYQLGKQLSFRWT 498


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,230,733
Number of Sequences: 37544
Number of extensions: 172332
Number of successful extensions: 469
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)