Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O12
(398 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 28 0.46
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.4
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 5.7
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 24 7.6
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 24 7.6
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 24 7.6
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 24 10.0
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 24 10.0
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 24 10.0
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 24 10.0
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 28.3 bits (60), Expect = 0.46
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 115 SETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQP 225
SET S S K+G T+RR S R +KLK +P
Sbjct: 2 SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRP 38
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 1.4
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 73 VSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK 240
++ S ++RG T E V + G T+ Y SLS+ ++K +N P SK
Sbjct: 189 LATSASNSDRGASTPEMVVKAEKREGSTSPIPYSSLSI--AERIKQAQNTPFLESK 242
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 24.6 bits (51), Expect = 5.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 216 SWAFQLSGSSYRQTYI*PSCGTSCFWRNG 130
SW QLS SS+ +C SC RNG
Sbjct: 196 SWVVQLSFSSWNVVGDSATCLLSCSSRNG 224
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 314 VLSGVE*FPAFQQDCTSASILFTAYL 237
VLSG++ Q++CT ++L T+YL
Sbjct: 429 VLSGLQ--QLMQEECTDIAVLRTSYL 452
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 7.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 298 NDFLLFSRTVRVPPFFSPPICLT 230
ND L ++TV P FF+P +C T
Sbjct: 300 NDVEL-AKTVGTPAFFAPELCWT 321
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 24.2 bits (50), Expect = 7.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 191 LLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFANFL 84
LL LI+ +L + FG T Y +S +I+ + N L
Sbjct: 27 LLVLSLIFYILYI--CFGTTSYILSGIILGAYVNSL 60
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -1
Query: 221 WFLGLFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFAN 90
W L F + + ++VV F T+Y++ +I+ +F N
Sbjct: 345 WILPAFRILFSIFMASMSVIIVVSEVFLHTQYSLVGIILQKFTN 388
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 23.8 bits (49), Expect = 10.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 209 LFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFA 93
L S R + + + LL + A+G E SE +IP+F+
Sbjct: 434 LRSKRSIKQEPWVRELLEIFIAYGYFEVPESEEVIPKFS 472
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 23.8 bits (49), Expect = 10.0
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Frame = -3
Query: 372 SRPTHMFTETLAMRTTP*SCPEWGRMIS----CFSAGLYECLHSFHR 244
S P H + T + P W R S C + GLY +H HR
Sbjct: 161 SSPPHEPSVTFCQNCATTNTPLWRRDESGNPICNACGLYYKIHGVHR 207
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = -1
Query: 170 YSLLVVHP---AFGETEYTVSEVII 105
YSL V+H FG+T+YT+S +++
Sbjct: 1006 YSLSVLHLDGIKFGDTQYTISGMLM 1030
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,477
Number of Sequences: 5004
Number of extensions: 29571
Number of successful extensions: 78
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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