Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O12
         (398 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070994-1|AAL48616.1|  262|Drosophila melanogaster RE08669p pro...    61   6e-10
AE014297-4764|AAF57167.1|  262|Drosophila melanogaster CG11522-P...    61   6e-10
AE014297-4763|AAF57166.1|  243|Drosophila melanogaster CG11522-P...    36   0.026
AE013599-1637|AAS64860.1| 1346|Drosophila melanogaster CG17054-P...    34   0.061

>AY070994-1|AAL48616.1|  262|Drosophila melanogaster RE08669p
           protein.
          Length = 262

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 31/81 (38%), Positives = 45/81 (55%)
 Frame = +3

Query: 105 NYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLK 284
           N  L  G+LR+SK++MY ++A+Y+                  VK+IGG KNGG RTV LK
Sbjct: 23  NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLK 82

Query: 285 SRKSFYPTQDKIRESFSWQEF 347
             K+ YPT+  +++  S   F
Sbjct: 83  KSKASYPTKTFVKKRPSKANF 103



 Score = 35.5 bits (78), Expect = 0.026
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +1

Query: 283 KAGNHSTPLRTRSGSRSHGKSFSKHVRRTRPNLTPGTV 396
           K    S P +T    R    +FS+H R TR NLTPGTV
Sbjct: 82  KKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTV 119


>AE014297-4764|AAF57167.1|  262|Drosophila melanogaster CG11522-PB,
           isoform B protein.
          Length = 262

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 31/81 (38%), Positives = 45/81 (55%)
 Frame = +3

Query: 105 NYDLGNGVLRFSKSRMYHKKAIYKFVGXXXXXXXXXXXXTVVVKQIGGEKNGGTRTVLLK 284
           N  L  G+LR+SK++MY ++A+Y+                  VK+IGG KNGG RTV LK
Sbjct: 23  NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVFLK 82

Query: 285 SRKSFYPTQDKIRESFSWQEF 347
             K+ YPT+  +++  S   F
Sbjct: 83  KSKASYPTKTFVKKRPSKANF 103



 Score = 35.5 bits (78), Expect = 0.026
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +1

Query: 283 KAGNHSTPLRTRSGSRSHGKSFSKHVRRTRPNLTPGTV 396
           K    S P +T    R    +FS+H R TR NLTPGTV
Sbjct: 82  KKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTV 119


>AE014297-4763|AAF57166.1|  243|Drosophila melanogaster CG11522-PA,
           isoform A protein.
          Length = 243

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +1

Query: 283 KAGNHSTPLRTRSGSRSHGKSFSKHVRRTRPNLTPGTV 396
           K    S P +T    R    +FS+H R TR NLTPGTV
Sbjct: 63  KKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTV 100



 Score = 30.3 bits (65), Expect = 0.99
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +3

Query: 105 NYDLGNGVLRFSKSRMYHKKAIYK 176
           N  L  G+LR+SK++MY ++A+Y+
Sbjct: 23  NSYLKGGILRYSKAQMYKRRALYR 46


>AE013599-1637|AAS64860.1| 1346|Drosophila melanogaster CG17054-PB,
            isoform B protein.
          Length = 1346

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +1

Query: 73   VSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYI-SLSVRRTRKLKSPRNQPSWLSK*AV 249
            +S S   AN+ I  S T  S SP+AG     L I SL +R+     + +  P  +SK  V
Sbjct: 1104 ISESPNAANKVIEASPTAASPSPRAGHEASHLRIRSLRIRKVASTSTSQTTPKPVSKRKV 1163

Query: 250  KRMEALVQSC*KAGNHSTPLRTRSGS 327
              +E  +++  K     +P  + S S
Sbjct: 1164 VHLETPLRNGRKRVLRRSPSNSNSRS 1189


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,163,930
Number of Sequences: 53049
Number of extensions: 337139
Number of successful extensions: 726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1149697725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)