Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O12
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    31   0.40 
Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        26   8.7  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +3

Query: 102 RNYDLGNGVLRFSKSRMYHKK 164
           RN+DL  GVLRFS SR+  KK
Sbjct: 12  RNFDLSPGVLRFSASRLRLKK 32


>Z71177-5|CAA94871.2|  531|Caenorhabditis elegans Hypothetical
           protein AC3.8 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 218 FLGLFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFAN 90
           FL +F F  L  + L Y+ LVV P FG +       +    AN
Sbjct: 4   FLLVFLFFALYCNVLAYNYLVVAPVFGYSHMKFMNKVADTLAN 46


>AF078788-7|AAC26958.1|  227|Caenorhabditis elegans Hypothetical
           protein ZC190.8 protein.
          Length = 227

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 292 NHSTPLRTRSGSRSHGKSFSKHVRRTRPNL 381
           N    +R +SG+++H K  S+H  R  P+L
Sbjct: 111 NSHRSVREKSGNKTHAKESSRHRYRQFPHL 140


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
           protein F39B2.4b protein.
          Length = 1589

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 209 LFSFRVLLTDKLIYSLLVVHPAFGE 135
           +F F+VL  D+L+ S L++HPA  E
Sbjct: 911 VFQFQVLRADRLLLS-LIMHPATDE 934


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
           protein F39B2.4a protein.
          Length = 1587

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 209 LFSFRVLLTDKLIYSLLVVHPAFGE 135
           +F F+VL  D+L+ S L++HPA  E
Sbjct: 909 VFQFQVLRADRLLLS-LIMHPATDE 932


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 209 LFSFRVLLTDKLIYSLLVVHPAFGE 135
           +F F+VL  D+L+ S L++HPA  E
Sbjct: 909 VFQFQVLRADRLLLS-LIMHPATDE 932


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,029,451
Number of Sequences: 27780
Number of extensions: 168071
Number of successful extensions: 428
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)