Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O10
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    55   2e-09
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   2.8  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   3.7  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    24   4.9  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    24   6.5  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    23   8.6  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    23   8.6  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 55.2 bits (127), Expect = 2e-09
 Identities = 23/38 (60%), Positives = 33/38 (86%)
 Frame = +2

Query: 209 GKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLRIM 322
           GKI  +E IYL+SLPIKE++I+D+FL P LNDEV++++
Sbjct: 47  GKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVV 83



 Score = 35.1 bits (77), Expect = 0.003
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 151 KEDQKEWVPVTKLGRLV 201
           ++++KEWVPVTKLGRLV
Sbjct: 28  RDEEKEWVPVTKLGRLV 44


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 60  PRRLWIPWWRQRSWRPTWSWSRTRARPWPWQGRPER 167
           PRR   P   +R+W+P     R R R   ++GR +R
Sbjct: 78  PRR---PVEHERNWQPELKHGRERFRERDYEGRRDR 110


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 222  LSILPSQDKATKLGDWHPLFLVFL 151
            L +  SQD  TKL +W   F++ L
Sbjct: 1917 LEVYSSQDTPTKLNEWANYFMLCL 1940


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 84  WRQRSWRPTWSWSRTRARPWPWQGR 158
           W++  W   WS SR   R + W  R
Sbjct: 61  WKRDLWSIWWSLSRKATRFYRWLSR 85


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 209 GKIDKLESIYLFSLPIKEFEIIDFFLG 289
           G +  + S YLF+LP+  F ++ F  G
Sbjct: 465 GGLISIGSSYLFALPVTVFVVVYFNTG 491


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -2

Query: 233 CSQACRFCLHRT-RRP 189
           C++ CRFC  +T RRP
Sbjct: 131 CTRGCRFCSVKTSRRP 146


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 164 KSGCQSPSLVALSCEGKID-KLESIYLFSLPIKEFE 268
           K+G Q P LV L  E K+   L+S + FS+   E E
Sbjct: 263 KAGLQDPVLVRLDVESKVSADLQSAF-FSVKTAERE 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,117,856
Number of Sequences: 5004
Number of extensions: 18635
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)