Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O10
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    45   1e-05
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   0.58 
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    29   0.77 
Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    27   2.3  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical ...    25   9.5  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 26/38 (68%), Positives = 28/38 (73%)
 Frame = +2

Query: 206 EGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLRI 319
           E KI  LE IYL SLPIKEFEIID  L  +L DEVL+I
Sbjct: 69  EKKITTLEEIYLNSLPIKEFEIID-ALCSNLKDEVLKI 105



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 154 EDQKEWVPVTKLGRLV 201
           E + EW PVTKLGRLV
Sbjct: 52  EKETEWTPVTKLGRLV 67


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
 Frame = -3

Query: 148 HGHGRARVRDHDHVGRHDLC-RHHGIQSRRGNRHVHRLELRPPLLNDH 8
           HGH       H H G H     HHG     G  H H      P  + H
Sbjct: 516 HGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGH 563



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = -3

Query: 148 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRH 50
           H HG   V  H H G H    HHG     G  H
Sbjct: 646 HHHGSHGVH-HGHHGTHHSLAHHGHHGGHGTHH 677



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/48 (29%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
 Frame = -3

Query: 148 HGHGRARVRDHDHVGRHDLC-RHHGIQSRRGNRHVHRLELRPPLLNDH 8
           HG        H H G H     HHG     G  H H      P  + H
Sbjct: 458 HGEHHHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGH 505



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 148 HGHGRARVRDHDHVGRHDLCRHHG 77
           HGHG      H H G H +  HHG
Sbjct: 593 HGHGHHAPAHHGHHGEHGV--HHG 614



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/36 (33%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = -3

Query: 148 HGHGRARVRDHDHVGRHDLC-RHHGIQSRRGNRHVH 44
           HGHG      H H G H     HHG      +   H
Sbjct: 445 HGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHHAPAH 480



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = -3

Query: 148 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVH 44
           HGH       H H G H    HHG      +   H
Sbjct: 481 HGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAH 515



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = -3

Query: 148 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVH 44
           HGH       H H G H    HHG      +   H
Sbjct: 539 HGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAH 573


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 254 WEERIGKCSQACRFCLHRTRR 192
           W E  G+CSQ C  C HR R+
Sbjct: 634 WSEWQGECSQQCGGCGHRLRK 654


>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -3

Query: 148 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVHRLE 35
           HGH      DH H   HD   HHG  S   + H H  E
Sbjct: 99  HGHSHDEEEDHHHGHAHD---HHG-HSHEDHGHSHGAE 132



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
 Frame = -3

Query: 148 HGHGRARVRDHDHVGRHDLCR-HHGIQSRRGNRHVH 44
           H HG A   DH H   H     HHG        H H
Sbjct: 76  HDHGHAHDHDHGHAHDHGHAHDHHGHSHDEEEDHHH 111


>Z81579-6|CAB04652.3|  347|Caenorhabditis elegans Hypothetical
           protein R13H4.7 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 45  WTWRFPRRLWIPWWRQRSWRPTWSWSRTRARPWP 146
           W W     L   WW         +WSR  A  WP
Sbjct: 76  WRWNIHIYLDFTWWAMVYHYTVIAWSRLAAVQWP 109


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = +3

Query: 75  IPWWRQRSWRPTWSWSRTRARPWPWQGRPERVGASHQAWSPCPVKAKSTSLRAFTY 242
           I WW++      W W      P P QG  E +  +    SP  + + + S    TY
Sbjct: 52  IGWWQKDENGWHWYWEDESNMPRPTQGLSEIMSTTTTTGSPLSIYSTTPSDAPETY 107


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = -3

Query: 148 HGHGRARVRDHDHVGRHDLCRHHGIQSRRGNRHVHRLELRPPLLNDH 8
           HG      R H H GRH      G     G  H H  + R P  + H
Sbjct: 369 HGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHGH 415


>AF016684-9|AAB66212.2|  348|Caenorhabditis elegans Hypothetical
           protein F45C12.14 protein.
          Length = 348

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 145 GHGRARVRDHDHVGRHDLC 89
           GH +  +++HDH+G  DLC
Sbjct: 202 GH-KVLIKNHDHLGVSDLC 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,234,104
Number of Sequences: 27780
Number of extensions: 106111
Number of successful extensions: 401
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)