Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O09
(496 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 26 3.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 3.6
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 26 3.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.6
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 4.7
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 4.7
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 6.3
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 25 8.3
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 8.3
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 3.6
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 328 PKPNSQCPRRNGFFAHPDTSVCNIF-FNCIEGDATEVK 438
PKP P+ F PD SV N + FN I DA K
Sbjct: 149 PKPQPGNPKPRYFRLKPDLSVINRYGFNSIGHDAILAK 186
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 145 PNKDGQYEDERQCDKFYECVDGVATTKICPDGLVFDPTIRK 267
P Y D+ ++ E V G T +C ++FD TIR+
Sbjct: 488 PTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRE 528
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 378 GVSEETVTAWALAVWLGGLQLSPVSAVNVEG 286
G +E V + L VW GG + P++ +EG
Sbjct: 349 GSKQEEVIPYGLLVWAGGNRARPLTKKLMEG 379
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 3.6
Identities = 20/73 (27%), Positives = 27/73 (36%)
Frame = +2
Query: 260 SGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVMPPK*S 439
S STS+ P T T+ T + N P T S T +P
Sbjct: 142 STSSTSIPIPPTSTSSTDTNSN-PLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVP---- 196
Query: 440 APVVSTSTNIPAP 478
P ++ST+IP P
Sbjct: 197 -PTSTSSTSIPIP 208
Score = 25.4 bits (53), Expect = 4.7
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Frame = +2
Query: 236 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPP-----SQTASAHAVTVXXXXXXXXXXXX 400
T SI P+G ST+ +P+ T + PP S T ++ +
Sbjct: 286 TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSI 345
Query: 401 XXXXXKVMPPK*SAPVVST-STNIPAP 478
P + P ST ST+ P P
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPP 372
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 236 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVT 361
T SI P+G ST+ +P+ T + PP +++ T
Sbjct: 340 TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 381
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 4.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 485 QTQVPEYSSKWRPPVHFTSVASPSMQ 408
+ VP++ WR +H S+A+ S Q
Sbjct: 623 EEDVPDHQPSWRGRIHSFSIATDSSQ 648
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 4.7
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -2
Query: 405 EEDVADRR-VGVSEETVTAWALAVWLGGLQLSPVSAVNVEGLVTLVDFP 262
+ ++ DR+ + S ++ + +LA L L ++P + +GL+ +VD P
Sbjct: 144 KSNLTDRKPIPTSRKSNKSDSLASALSQLDINPSNVNKFDGLINIVDHP 192
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.0 bits (52), Expect = 6.3
Identities = 18/80 (22%), Positives = 29/80 (36%)
Frame = +2
Query: 257 PSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVMPPK* 436
P G + L++ + L + S T +H+ T V P
Sbjct: 208 PYGSPVRSSKNPFLSSNSRLPTDDSSHTVGSHSFTSGTHPPIVSSNSAFTLPNAVTPAA- 266
Query: 437 SAPVVSTSTNIPAPVSGPTQ 496
AP++ + + PA VS P Q
Sbjct: 267 QAPLIRSVSEYPANVSPPAQ 286
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 455 WRPPVHFTSVASPSMQLK 402
WR H T ASPS++L+
Sbjct: 240 WRQVTHLTEYASPSVRLE 257
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 166 EDERQCDKFYECVDGVATTKICPDGLVFDPTIRKINKCDQP 288
EDE + D++ E VDG A+ I D + D K P
Sbjct: 133 EDEWESDEYEEVVDGSASHPIEEDSVSTDFQNHDYEKSSDP 173
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,319
Number of Sequences: 5004
Number of extensions: 32388
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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