Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O09
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 30 0.89
07_01_1054 + 9250298-9250428,9250889-9251489 30 1.2
01_06_1658 - 38954953-38955145,38955310-38955368,38955541-389555... 30 1.2
06_03_0336 + 19671500-19672150,19672681-19673301 29 1.6
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 29 2.7
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 29 2.7
05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320 29 2.7
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 29 2.7
02_01_0348 - 2506007-2506909,2507003-2508120,2508230-2508883,250... 29 2.7
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 29 2.7
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 29 2.7
09_04_0457 - 17736158-17737336 28 3.6
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 27 6.3
02_05_0239 + 27101440-27101904 27 6.3
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 27 6.3
05_05_0290 - 23879064-23880035 27 8.3
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076... 27 8.3
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 30.3 bits (65), Expect = 0.89
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 464 SSKWRPPVHFTSVASPSMQLKKMLQTDVSG*AKKPLRRGHWLFGL 330
SS PP +A+PS +L +Q + G +++ + GHWL GL
Sbjct: 484 SSNPTPPPSLPFIATPSPEL---IQNVLGGFSERCAKDGHWLMGL 525
>07_01_1054 + 9250298-9250428,9250889-9251489
Length = 243
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -2
Query: 453 ETTGALHFGGITFDAVEEDVADR--RVGVSEETVTAWALAVWLG 328
E G LH G+ VE+ D VG+ E+ V AW+ W G
Sbjct: 112 EVGGGLHRSGVADSKVEDGRRDAGVEVGMQEKVVQAWSGRRWRG 155
>01_06_1658 -
38954953-38955145,38955310-38955368,38955541-38955587,
38956264-38956294,38956507-38956569,38956760-38956855,
38956939-38957022,38957112-38957204,38957505-38957582,
38957938-38958028,38958108-38958208,38958303-38959121,
38959216-38959266
Length = 601
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 347 HWLFGLGGCSSVLSPQSTLK 288
+WLF GG S LSP+STL+
Sbjct: 327 YWLFAYGGYSGDLSPESTLE 346
>06_03_0336 + 19671500-19672150,19672681-19673301
Length = 423
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 208 GVATTKICPDGLVFDPTIRKINKCDQPFNVDCGD 309
G A +C + +V T+R++ C F+VDC D
Sbjct: 144 GGALCAVCLEDVVAGETVRRLPSCGHLFHVDCID 177
>12_02_0035 -
12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 464 SSKWRPPVHFTSVASPSMQLKKMLQTDVSG*AKKPLRRGHWLFGL 330
SS PP +A+PS +L +Q + G +++ + GHWL GL
Sbjct: 715 SSNPTPPPSPPFIATPSPEL---IQNVLGGFSERCAKDGHWLMGL 756
>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
Length = 945
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 464 SSKWRPPVHFTSVASPSMQLKKMLQTDVSG*AKKPLRRGHWLFGL 330
SS PP +A+PS +L +Q + G +++ + GHWL GL
Sbjct: 538 SSNPTPPPSPPFIATPSPEL---IQNVLGGFSERCAKDGHWLMGL 579
>05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320
Length = 251
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 320 SSVLSPQSTLKGWSHLLIFLMVGSNTSPSG 231
+++L P+S++ G+ LL L+VG+NT G
Sbjct: 161 ATILDPRSSVPGFGPLLTGLIVGANTIAGG 190
>02_05_0740 -
31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 464 SSKWRPPVHFTSVASPSMQLKKMLQTDVSG*AKKPLRRGHWLFGL 330
SS PP +A+PS +L +Q + G +++ + GHWL GL
Sbjct: 419 SSNPTPPPSPPFIATPSPEL---IQNVLGGFSERCAKDGHWLMGL 460
>02_01_0348 -
2506007-2506909,2507003-2508120,2508230-2508883,
2508920-2509046
Length = 933
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 464 SSKWRPPVHFTSVASPSMQLKKMLQTDVSG*AKKPLRRGHWLFGL 330
SS PP +A+PS +L +Q + G +++ + GHWL GL
Sbjct: 526 SSNPTPPPSPPFIATPSPEL---IQNVLGGFSERCAKDGHWLMGL 567
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 464 SSKWRPPVHFTSVASPSMQLKKMLQTDVSG*AKKPLRRGHWLFGL 330
SS PP +A+PS +L +Q + G +++ + GHWL GL
Sbjct: 538 SSNPTPPPSPPFIATPSPEL---IQNVLGGFSERCAKDGHWLMGL 579
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 464 SSKWRPPVHFTSVASPSMQLKKMLQTDVSG*AKKPLRRGHWLFGL 330
SS PP +A+PS +L +Q + G +++ + GHWL GL
Sbjct: 539 SSNPTPPPSPPFIATPSPEL---IQNVLGGFSERCAKDGHWLMGL 580
>09_04_0457 - 17736158-17737336
Length = 392
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 187 KFYECVDGVATTKICPDGLVFDPTIRKINKCDQPFNVDCGD 309
K ++ V G +C D T+R + KC F+ DC D
Sbjct: 114 KAHKSVKGALECAVCISEFDDDETLRLLPKCSHVFHQDCID 154
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 251 ILPSGKSTSVTSPSTLTAETGLSCNPPSQ-TASAH 352
+ P S+S+ SP++ T TGLS P Q +AH
Sbjct: 343 LYPESPSSSLISPASATPRTGLSSPIPEQEVPTAH 377
>02_05_0239 + 27101440-27101904
Length = 154
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 226 ICPDGLVFDPTIRKINKCDQPFNVDCGDR 312
IC DG+ +R + C + F+ DC DR
Sbjct: 93 ICLDGMEAGRAVRVLPGCSRAFHQDCVDR 121
>01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-192161,
192248-192356,192401-192496,192724-193994,194200-194384,
194619-195055,197034-197077,197830-199036,199253-199479
Length = 1411
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 251 ILPSGKSTSVTSPSTLTAETGLSCNPPSQ-TASAH 352
+ P S+S+ SP++ T TGLS P Q +AH
Sbjct: 1119 LYPESPSSSLISPASATPRTGLSSPIPEQEVPTAH 1153
>05_05_0290 - 23879064-23880035
Length = 323
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -2
Query: 414 DAVEEDVADRRVGVSEETVTAWALAVWLGGLQLSPVSAVNVEGLVT 277
D+ EE AD VSE + WA+ WL L S A N G+ T
Sbjct: 262 DSHEEVRADGPGNVSESSNRPWAIVPWLNEL-FSTREAQNAGGVST 306
>04_04_1499 -
34006999-34007232,34007371-34007440,34007580-34007637,
34007940-34007979,34008183-34008259,34008366-34008582,
34008703-34009266
Length = 419
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 283 QPFNVDCGDRTELQPPKPNSQCPRRNGFFAHPDTS 387
+P D G+RT L PP R +G FA T+
Sbjct: 139 RPQKRDSGERTPLPPPSQQQHQDRIHGLFAGAPTT 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,892,399
Number of Sequences: 37544
Number of extensions: 259547
Number of successful extensions: 897
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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