Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O08
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   0.57 
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    24   4.0  
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    24   5.3  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    24   5.3  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    23   7.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   9.3  
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    23   9.3  
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    23   9.3  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.1 bits (57), Expect = 0.57
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 169 DHLKYAKTSSYHDQ*ARFVSEGSHSAGN 86
           D L  + TSSYH +  R +SE S S+ N
Sbjct: 2   DSLSESSTSSYHGKRPRSLSEESQSSSN 29


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 141 LDVLAYFRWSCSYSLLLTC 197
           +D +AY RWS     LL+C
Sbjct: 255 IDTVAYIRWSPDDRYLLSC 273


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 17  ADLNDILLRVSAFGLFVYAVFCII 88
           +D +D  L VS FG F++ V  ++
Sbjct: 186 SDRSDYFLVVSGFGFFIFVVVYLL 209


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 5   IRHEADLNDILLRVSAFGLFVYAVFCI 85
           IR   DL  I     ++GL++Y  FCI
Sbjct: 326 IRQPMDLYIITDHGPSYGLYLYLFFCI 352


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 238 LASFLFWEMYSKSRHVSNKE 179
           L  +L W++Y K++ VS+ E
Sbjct: 470 LGLYLIWKIYKKTKLVSSSE 489


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 153  LRHPVIMTSKLGS*VKAPIPPAIMQKTAYTKSPN-AETRSK 34
            L  PV + + + + V  P PPA   K    K+P+   TR K
Sbjct: 886  LAAPVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPATRPK 926


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 75  FSALLPAEWEPSLTNL 122
           FSAL P +W+ ++ NL
Sbjct: 200 FSALSPDQWQQAIENL 215


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 8/35 (22%), Positives = 20/35 (57%)
 Frame = +2

Query: 182 FIADVSRLRVHLPEQERSKPARQAVTFLLICNVTM 286
           F+ D + + +H+  ++RS+P  Q V   ++  + +
Sbjct: 166 FLQDGNIVEIHVQNKKRSQPVSQEVRDSILSKIQL 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,159,080
Number of Sequences: 5004
Number of extensions: 19258
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)