Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O08
         (293 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295...    30   0.28 
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524...    28   1.1  
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061     28   1.5  
03_01_0581 + 4310136-4310186,4310940-4311144,4311245-4311410,431...    28   1.5  
03_05_0560 + 25636969-25637227,25637744-25637793,25637813-25638748     27   2.6  
02_03_0106 + 15292869-15296138                                         26   4.6  
01_05_0610 - 23636097-23638958                                         26   6.1  
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821           26   6.1  
03_06_0145 - 31973924-31975837                                         25   8.0  

>04_04_0670 -
           27128153-27129075,27129152-27129266,27129348-27129537,
           27129652-27129786,27129874-27129971,27131075-27131764
          Length = 716

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 289 PHGDIADKQESNSLTRRLASFLFWEMY 209
           PHGD   KQ+ N  T+  A   FW  +
Sbjct: 256 PHGDAMAKQQVNGFTKYFAMSFFWSFF 282


>01_01_0682 -
           5244805-5244919,5246468-5246613,5246813-5246994,
           5247069-5247295,5247382-5247467,5247564-5247656,
           5247964-5248118,5248407-5248490,5248589-5248768,
           5249587-5249828,5249927-5249982
          Length = 521

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +2

Query: 11  HEADLNDILLRVSAFGLFVYAVFCIIAGGMGAFTHEPSLL 130
           H AD + +LL+ + FGL ++   C I+G +   T++ ++L
Sbjct: 449 HGADFHMLLLQRAMFGLSLWMAMC-ISGSLNLLTNDRTVL 487


>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
          Length = 875

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
 Frame = -3

Query: 285 MVTLQISKKVTA*RAGLLRSCSGRCTRSRDTSAIKSNCRTT*STL-RHPVIMTSKLGS*V 109
           M++LQ++KK  A  AG++   S R + + +  A+K  C++T      +       L    
Sbjct: 411 MLSLQVAKKEEA-VAGIISVSSNRSSGTENELAMKDACKSTLREYDENGKSSPRNLAKSK 469

Query: 108 KAPIPPAIMQKTAY-TKSPNAETRSKMSLRSASCRI 4
             P+  +I    A   +S N+E   K+  +S   ++
Sbjct: 470 SVPVSSSIFDNVAVNAQSANSEGTPKVFTKSGRAKL 505


>03_01_0581 +
           4310136-4310186,4310940-4311144,4311245-4311410,
           4312035-4312257,4312891-4312967,4313091-4313278,
           4313363-4313457,4313674-4313807,4313914-4314024,
           4314304-4314619,4314919-4315040,4315183-4315293,
           4315824-4316012,4316105-4316263,4316449-4316530,
           4317080-4317190
          Length = 779

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 97  SAGNNAENSVHEKSKCRNTKQDVVEI 20
           S+GN+ E  ++E+S   N+  DVV I
Sbjct: 704 SSGNSCEEEIYERSSLINSPMDVVSI 729


>03_05_0560 + 25636969-25637227,25637744-25637793,25637813-25638748
          Length = 414

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 6   FGTRQISTTSCFVFLHLDFSCTLFSALLPAEWEPSLTNLAY 128
           FG R+IS     V +HL  S T F  +  A W+     L Y
Sbjct: 199 FGPREISAMRNHVPVHLRQSYTTFELIAAAVWKCRTAALGY 239


>02_03_0106 + 15292869-15296138
          Length = 1089

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 144  DVLAYFRWSCSYSLLLTCLD 203
            D L +F   CS SLL +CLD
Sbjct: 1028 DGLCHFELQCSLSLLRSCLD 1047


>01_05_0610 - 23636097-23638958
          Length = 953

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +3

Query: 51  HLDFSCTLFSALLPAEWEPSLTNL 122
           HLD SC  FS  LP E+  SL NL
Sbjct: 120 HLDLSCNNFSGTLP-EFLGSLHNL 142


>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
          Length = 998

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 136 HDQ*ARFVSEGSHSAGNNAENSVHEKSKCR 47
           HD+  R    G+H++       VH+K  CR
Sbjct: 569 HDKIRRLSVHGAHTSQGKQAGGVHDKHLCR 598


>03_06_0145 - 31973924-31975837
          Length = 637

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 144 PVIMTSKLGS*VKAPIPPAIMQKTAYTKSPNAETRS 37
           PVI   K  S    P PPA+M   A T  P  + R+
Sbjct: 425 PVIDEHKSKSGDAPPTPPAVMVSPAATSPPPLDART 460


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,001,882
Number of Sequences: 37544
Number of extensions: 137598
Number of successful extensions: 446
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)