Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O08
(293 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 0.59
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 0.59
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 2.4
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 21 4.2
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 20 5.5
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 20 5.5
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 20 5.5
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 20 5.5
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 20 5.5
AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II ... 20 7.3
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 19 9.6
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 19 9.6
AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor prot... 19 9.6
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.4 bits (48), Expect = 0.59
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 29 DILLRVSAFGLFVYAVFCIIAGGMGAF 109
++ + + F ++ +FCI GGM F
Sbjct: 416 ELFIAIVCFVSYLIGLFCITEGGMYVF 442
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.4 bits (48), Expect = 0.59
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 29 DILLRVSAFGLFVYAVFCIIAGGMGAF 109
++ + + F ++ +FCI GGM F
Sbjct: 469 ELFIAIVCFVSYLIGLFCITEGGMYVF 495
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.4 bits (43), Expect = 2.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 87 IMQKTAYTKSPNAE 46
I Q T YTK+ NAE
Sbjct: 1210 ITQYTVYTKADNAE 1223
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 20.6 bits (41), Expect = 4.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +2
Query: 41 RVSAFGLFVYAVFCIIAGGMGAF 109
R+ + AVF ++ GG G F
Sbjct: 3 RLVLASFLLLAVFSMLVGGFGGF 25
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 20.2 bits (40), Expect = 5.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Frame = +2
Query: 41 RVSAFGLFVYAVFCIIAGGMGAF 109
R+ + A+F ++ GG G F
Sbjct: 3 RLVLASFLLLAIFSMLVGGFGGF 25
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 20.2 bits (40), Expect = 5.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 201 RDTSAIKSNCRTT*STLRHPVIMTSKLGS 115
R+TS +S RT R P I++S L +
Sbjct: 282 RETSKERSRDRTERERSREPKIISSLLNN 310
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 20.2 bits (40), Expect = 5.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 201 RDTSAIKSNCRTT*STLRHPVIMTSKLGS 115
R+TS +S RT R P I++S L +
Sbjct: 293 RETSKERSRDRTERERSREPKIISSLLNN 321
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 20.2 bits (40), Expect = 5.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 201 RDTSAIKSNCRTT*STLRHPVIMTSKLGS 115
R+TS +S RT R P I++S L +
Sbjct: 293 RETSKERSRDRTERERSREPKIISSLLNN 321
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 20.2 bits (40), Expect = 5.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 201 RDTSAIKSNCRTT*STLRHPVIMTSKLGS 115
R+TS +S RT R P I++S L +
Sbjct: 282 RETSKERSRDRTERERSREPKIISSLLNN 310
>AB013287-1|BAA87893.1| 190|Apis mellifera calmodulin kinase II
protein.
Length = 190
Score = 19.8 bits (39), Expect = 7.3
Identities = 5/11 (45%), Positives = 8/11 (72%)
Frame = +1
Query: 79 LHYCRRNGSLH 111
+H+C NG +H
Sbjct: 22 VHHCHHNGVVH 32
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 19.4 bits (38), Expect = 9.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 85 NAENSVHEKSK 53
NA+NSVH SK
Sbjct: 21 NADNSVHILSK 31
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 19.4 bits (38), Expect = 9.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -2
Query: 91 GNNAENSVHEKSKCRNTK 38
GNN E ++ + KC+ +
Sbjct: 226 GNNCEIDMYMRRKCQECR 243
>AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor
protein.
Length = 72
Score = 19.4 bits (38), Expect = 9.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = -2
Query: 91 GNNAENSVHEKSKCRNTK 38
GNN E ++ + KC+ +
Sbjct: 23 GNNCEIDMYMRRKCQECR 40
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,214
Number of Sequences: 438
Number of extensions: 1143
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used: 5994288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
- SilkBase 1999-2023 -