Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O06
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    24   2.3  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    24   3.1  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    23   4.0  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    23   7.1  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    22   9.3  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    22   9.3  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    22   9.3  

>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 25 YGLQFHVICVTLCYVLYNYFL 87
          Y L   ++ ++LCY +YN FL
Sbjct: 6  YVLLVIILILSLCYFIYNNFL 26


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 166 DKAAPTWLPTFISPTLLIYDIYF 98
           DK +PTW    +SP   ++   F
Sbjct: 498 DKPSPTWYQRLLSPIFWVFQHLF 520


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 79  YFLM*IKNIYHKLEAWEK 132
           YFL  ++N Y  L+ W K
Sbjct: 274 YFLSYVENRYQSLDCWNK 291


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 112 YDIYFLFTLKNNYIKHSTKLHK*R 41
           ++ Y   T K++YI H T  H  R
Sbjct: 316 FEHYGFITYKSSYIAHDTARHNSR 339


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 73  YNYFLM*IKNIYHKLEAW 126
           Y+  L  IK +YHKLE++
Sbjct: 133 YDQKLSTIKEMYHKLESY 150


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 97  LFTLKNNYIKHSTKLHK 47
           +FT KN Y  H+ K H+
Sbjct: 98  VFTKKNRYFFHNLKSHE 114


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 28  GLQFHVICVTLCYVLYN 78
           GLQ H  C  +C  LYN
Sbjct: 105 GLQPHSSCFKICKRLYN 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 718,720
Number of Sequences: 5004
Number of extensions: 10742
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)