Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O06
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822...    29   0.40 
03_06_0370 + 33431696-33432217,33432521-33432796,33433003-334331...    27   2.8  
01_01_0116 - 861044-861405,861495-861633,862078-862501,862634-86...    26   3.7  

>03_06_0345 -
           33281126-33281783,33281872-33282063,33282175-33282217,
           33282751-33282874,33282966-33283058,33284484-33284685,
           33284751-33284857,33285462-33285543,33285629-33285666,
           33285751-33285837,33286324-33286434,33286554-33286904
          Length = 695

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -2

Query: 88  LKNNYIKHSTKLHK*RETVVRKNXKGSLV 2
           LKNNY+    K+HK +E +++K  + +L+
Sbjct: 344 LKNNYLPEMEKIHKKKERLLKKQQREALL 372


>03_06_0370 +
           33431696-33432217,33432521-33432796,33433003-33433183,
           33433253-33433455,33433545-33433732,33433844-33434105
          Length = 543

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 166 DKAAPTWLPTFISPTLLIYDIYFLFTLKNNY 74
           DK  P WL   ++ T+L  D+Y L   + N+
Sbjct: 368 DKFIPRWLHHMVTNTVLDSDLYLLHIEERNF 398


>01_01_0116 -
           861044-861405,861495-861633,862078-862501,862634-863131,
           863217-863249,863490-863680,863828-864132,864196-864208
          Length = 654

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 162 RRHRHGCPP 136
           R HRHGCPP
Sbjct: 13  RHHRHGCPP 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,689,931
Number of Sequences: 37544
Number of extensions: 64205
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)