Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O06
         (179 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023847-8|CAI46616.1|  262|Caenorhabditis elegans Hypothetical ...    25   5.4  
AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical ...    25   5.4  
U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical pr...    25   7.1  

>AL023847-8|CAI46616.1|  262|Caenorhabditis elegans Hypothetical
           protein Y57A10C.11 protein.
          Length = 262

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 19  HFYGLQFHVICVTLCYVLYNY 81
           +FYG  F+++   L Y LY Y
Sbjct: 105 NFYGSWFYILITILIYALYAY 125


>AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical
           protein H24D24.1 protein.
          Length = 349

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
 Frame = -2

Query: 151 TWLPTFISPTLLIYDIYFLFTLK-------NNYIKHSTKL 53
           T +P+ I P + I  IYFL T+K       NN+   STK+
Sbjct: 227 TLIPSIILPIVTIVLIYFLKTMKRSTASNNNNHNARSTKM 266


>U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical
           protein F01E11.5a protein.
          Length = 462

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -2

Query: 139 TFISPTLLIYDIYFLFTLKNNYIKHSTKLHK*RETVVRKNXKGSLV 2
           +F  PTLL++ +Y  F +   + KH  +    R+ V+RK+ + +++
Sbjct: 193 SFFIPTLLMFFVY--FKIYQAFAKHRAR-QIYRQKVIRKHIESTIL 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,025,837
Number of Sequences: 27780
Number of extensions: 59027
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)