Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O05
         (269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    62   1e-11
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...    62   1e-11
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    25   1.9  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   2.5  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    24   3.2  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    23   7.5  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    23   7.5  
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   9.9  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    23   9.9  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 62.5 bits (145), Expect = 1e-11
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = +2

Query: 86  VDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTH 265
           V+L+QLLD+  EQL++L H         GL       ++KLR+AK EAP NEKP  VKTH
Sbjct: 29  VELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTH 88

Query: 266 L 268
           L
Sbjct: 89  L 89


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score = 62.1 bits (144), Expect = 1e-11
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = +2

Query: 86  VDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTH 265
           V+L+QLLD+  EQL++L H         GL       ++KLR+AK EAP NEKP  VKTH
Sbjct: 28  VELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTH 87

Query: 266 L 268
           L
Sbjct: 88  L 88


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 13  KSETWLRSMNS*EKTYIQEVYLPRSRFRSTPRHAQ*T 123
           +S+ W+ ++    K Y+   YL RSR     R  Q T
Sbjct: 328 ESQKWINNITKDMKYYLIATYLSRSRLSKAERILQST 364


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 173 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTHL 268
           L R+P  + +K R   KEA PN    I++  L
Sbjct: 10  LPRRPPYMAEKARATLKEAFPNTDDAIIRAVL 41


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 232 RCLLLSAAQFLYQCHWFALE 173
           + L+L  A+F Y C+W  L+
Sbjct: 210 KILILDVARFKYPCYWVDLK 229


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 207 NFFTSAIGLRLSPRAN 160
           NFFTSA+G ++  R N
Sbjct: 2   NFFTSAVGSKVFKRNN 17


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 247 GFLIWRCLLLSAAQF 203
           GFL W C+L++  QF
Sbjct: 419 GFLAWICVLVAYLQF 433


>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 163

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 173 LKRKPMALVKKLRRAKKEAPPNEKPEIVKTH 265
           LK  P AL KK+ R  ++    EK E  K H
Sbjct: 76  LKSLPPALKKKIERQLQKKKEAEKIEGGKNH 106


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 250 LGFLIWRCLLLSAAQF 203
           LG LIW+  LLS ++F
Sbjct: 697 LGVLIWQFFLLSRSKF 712


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,026,074
Number of Sequences: 5004
Number of extensions: 15758
Number of successful extensions: 50
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)