Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O05
(269 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449... 76 4e-15
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 55 7e-09
10_08_0165 + 15356748-15356811,15357113-15357186,15357311-153573... 28 1.2
09_03_0148 + 12770010-12770266,12772172-12772314,12773214-127735... 27 2.1
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 26 4.7
06_03_1302 - 29163974-29166907 25 6.3
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411... 25 6.3
03_05_0133 - 21122150-21122314,21122715-21123036,21123088-21123227 25 6.3
12_02_0412 - 18799217-18801061 25 8.3
10_08_0031 + 14281681-14282023,14282105-14282484,14282581-142826... 25 8.3
>07_01_0604 -
4491884-4491993,4493030-4493225,4494269-4494326,
4494459-4494613,4495092-4495115,4495377-4495489,
4499943-4500129
Length = 280
Score = 75.8 bits (178), Expect = 4e-15
Identities = 36/61 (59%), Positives = 43/61 (70%)
Frame = +2
Query: 86 VDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTH 265
VDLD LLDM + L++L GLKRKPMAL+KKLR+AKK+AP EKPE V+TH
Sbjct: 136 VDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTH 195
Query: 266 L 268
L
Sbjct: 196 L 196
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 55.2 bits (127), Expect = 7e-09
Identities = 36/82 (43%), Positives = 43/82 (52%), Gaps = 21/82 (25%)
Frame = +2
Query: 86 VDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRA---------------- 217
VDLD LLDM + L++L GLKRKPMAL+KKLR+A
Sbjct: 264 VDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAGSNFEGTVFRLGFYEA 323
Query: 218 -----KKEAPPNEKPEIVKTHL 268
KK+AP EKPE V+THL
Sbjct: 324 GSYFVKKDAPAGEKPEPVRTHL 345
>10_08_0165 +
15356748-15356811,15357113-15357186,15357311-15357394,
15357508-15357602,15357737-15357790,15357791-15357896,
15358236-15358277,15358585-15358674,15358788-15358984,
15359355-15359413,15360166-15362252
Length = 983
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -3
Query: 222 FLARRNFFTSAIGLRLSPRANRLRARACINSMSCSLGMSRS*SKSTPRKVNFLNVRF 52
+ R F + + N+L CI S+S S+G++R+ S + +NF V+F
Sbjct: 208 YAERNTMFFIETSAKTADNINQL-FEVCIRSISESVGLNRNWSMTVETMINFSCVQF 263
>09_03_0148 +
12770010-12770266,12772172-12772314,12773214-12773596,
12773895-12773971,12774061-12774211
Length = 336
Score = 27.1 bits (57), Expect = 2.1
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = -3
Query: 252 ISGFSFGGASFLARRNFFTSAIGLR----LSPRANRLRARACINSMSCSLGMSRS*SKST 85
++G + +S +R FF GLR L+P RL AR SMS S+G
Sbjct: 68 VAGSNSNNSSKAKKRAFFPCLHGLRGGVSLAPPRRRLVARGPRCSMSLSIGGGAGAGAGG 127
Query: 84 PRKVNFLNVRFFLRVHRPQP 25
R ++ +V F R P
Sbjct: 128 DRGFSYEHVPVFPRYRIRDP 147
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 165 ANRLRARACINSMSCSLGMSRS*SKSTPRKVN 70
A R ++R+ + S S+ RS SKS PR V+
Sbjct: 475 ARRSKSRSPLREKSVSMSPRRSMSKSLPRSVS 506
>06_03_1302 - 29163974-29166907
Length = 977
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 76 GKLPECTFFLKSSSTSAMFLISSCA 2
GKL ECTF K+ + + + + CA
Sbjct: 893 GKLNECTFGTKNMANLEVLVFAKCA 917
>03_05_0487 +
24838620-24838967,24840526-24840747,24840819-24841109,
24841316-24841513,24841641-24841705,24841788-24841874,
24841988-24842108,24842200-24842244,24842321-24842458,
24842571-24842643,24842723-24842799,24842882-24842989,
24843108-24843224,24843524-24843679,24843780-24843881,
24844036-24844161,24844237-24844314,24844390-24844485,
24844592-24844707,24844781-24844850,24844930-24844983,
24845062-24845205,24845297-24845596,24845780-24846202,
24846316-24846429
Length = 1222
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 170 GLKRKPMALVKKLRRAKKEAPPNEKPEIVK 259
G+ R P LVK LRR +++ N + +V+
Sbjct: 612 GIHRNPDLLVKTLRRLRRQIDVNTEVGVVR 641
>03_05_0133 - 21122150-21122314,21122715-21123036,21123088-21123227
Length = 208
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -2
Query: 91 IDSSEGKLPECTFFLKSSSTSAMFL 17
+DS EG+LP C + + + ++M++
Sbjct: 65 LDSYEGRLPLCAISISTETNASMYV 89
>12_02_0412 - 18799217-18801061
Length = 614
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 228 ASFLARRNFFTSAIGLRLSPRANRLRARA-CINSMSCSLGMSR 103
AS A NF TS + LR PR RA CI+ + G+S+
Sbjct: 179 ASVAAEENFVTSDMVLRCKPRDIVRRASLNCIDDDESTGGLSQ 221
>10_08_0031 +
14281681-14282023,14282105-14282484,14282581-14282646,
14284078-14284191,14284302-14284418,14284526-14284652,
14284779-14285065,14285200-14285390,14285504-14285589,
14285718-14285794,14285902-14286090
Length = 658
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +2
Query: 221 KEAPPNEKPEI 253
KEAPP EKPE+
Sbjct: 151 KEAPPGEKPEL 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,966,725
Number of Sequences: 37544
Number of extensions: 114919
Number of successful extensions: 264
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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