Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O05
(269 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81077-5|CAB03065.1| 151|Caenorhabditis elegans Hypothetical pr... 61 9e-11
Z50874-5|CAA90764.1| 305|Caenorhabditis elegans Hypothetical pr... 25 7.3
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 25 7.3
AF068710-3|ABO16459.1| 189|Caenorhabditis elegans Hypothetical ... 25 7.3
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 25 9.7
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 25 9.7
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 25 9.7
AF022969-1|AAB69894.3| 391|Caenorhabditis elegans Hypothetical ... 25 9.7
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 25 9.7
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 25 9.7
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 25 9.7
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 25 9.7
>Z81077-5|CAB03065.1| 151|Caenorhabditis elegans Hypothetical
protein F36A2.6 protein.
Length = 151
Score = 61.3 bits (142), Expect = 9e-11
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = +2
Query: 86 VDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKKEAPPNEKPEIVKTH 265
VDLDQLLDM EQ +L+ GLKRK +AL+ K+++AKK A EKP VKTH
Sbjct: 26 VDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKKAAGVLEKPATVKTH 85
Query: 266 L 268
L
Sbjct: 86 L 86
>Z50874-5|CAA90764.1| 305|Caenorhabditis elegans Hypothetical
protein R10E4.3 protein.
Length = 305
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 226 LLLSAAQFL-YQCHWFALEPAREPPASARMHQFHE 125
+++ AQF+ + WF P EPP + MH+ +
Sbjct: 24 IIMFGAQFVCFLIAWFWFYPRDEPPNNQIMHKLEK 58
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 172 PAREPPASARMHQFHELFIGHV 107
P E PA+ Q HE+++GH+
Sbjct: 186 PDWEGPATGPAGQGHEIYVGHI 207
>AF068710-3|ABO16459.1| 189|Caenorhabditis elegans Hypothetical
protein T06A1.4 protein.
Length = 189
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 188 MALVKKLRRAKKEAPPNEKPEIVK 259
MA+ KKLR+ K + P +PE VK
Sbjct: 1 MAVFKKLRKNKDKNLPLPEPEAVK 24
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 203 KLRRAKKEAPPNEKPEIVKT 262
KL+ KKE P ++PE KT
Sbjct: 480 KLKEVKKEKSPEQQPEDPKT 499
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 203 KLRRAKKEAPPNEKPEIVKT 262
KL+ KKE P ++PE KT
Sbjct: 480 KLKEVKKEKSPEQQPEDPKT 499
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 193 CHWFALEPAREPPASARMHQFHELFIG 113
CH +L PA PPA A H H + IG
Sbjct: 900 CHTVSLTPA--PPA-AMTHSMHAMHIG 923
>AF022969-1|AAB69894.3| 391|Caenorhabditis elegans Hypothetical
protein C29G2.5 protein.
Length = 391
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 243 FSFGGASFLARRNFFTSAIGLRLS 172
F FGGAS A +FF + L +S
Sbjct: 24 FHFGGASCSACASFFRRTVSLNIS 47
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 193 CHWFALEPAREPPASARMHQFHELFIG 113
CH +L PA PPA A H H + IG
Sbjct: 898 CHTVSLTPA--PPA-AMTHSMHAMHIG 921
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 193 CHWFALEPAREPPASARMHQFHELFIG 113
CH +L PA PPA A H H + IG
Sbjct: 898 CHTVSLTPA--PPA-AMTHSMHAMHIG 921
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 193 CHWFALEPAREPPASARMHQFHELFIG 113
CH +L PA PPA A H H + IG
Sbjct: 898 CHTVSLTPA--PPA-AMTHSMHAMHIG 921
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 193 CHWFALEPAREPPASARMHQFHELFIG 113
CH +L PA PPA A H H + IG
Sbjct: 898 CHTVSLTPA--PPA-AMTHSMHAMHIG 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,739,470
Number of Sequences: 27780
Number of extensions: 90913
Number of successful extensions: 231
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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