Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O03
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    77   6e-16
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    76   1e-15
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    25   3.4  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   4.5  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    24   6.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   6.0  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    24   7.9  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    24   7.9  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 77.4 bits (182), Expect = 6e-16
 Identities = 36/60 (60%), Positives = 47/60 (78%)
 Frame = +3

Query: 168 KGRVFEVSLADLQADSDAERSFRKFRLIADDVQGRNVLCNFHGMDLTSDKLRWMVRKWQT 347
           KGR+ EVSLADLQ D   E SFRK +L  +D+QG++ L +F+G D+TSDKLR +VRKWQ+
Sbjct: 62  KGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQS 119



 Score = 67.7 bits (158), Expect = 5e-13
 Identities = 28/44 (63%), Positives = 35/44 (79%)
 Frame = +2

Query: 41  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKG 172
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKG
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKG 63


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 76.2 bits (179), Expect = 1e-15
 Identities = 35/60 (58%), Positives = 47/60 (78%)
 Frame = +3

Query: 168 KGRVFEVSLADLQADSDAERSFRKFRLIADDVQGRNVLCNFHGMDLTSDKLRWMVRKWQT 347
           KGR+ EVSLADLQ D   E +FRK +L  +D+QG++ L +F+G+ +TSDKLR +VRKWQT
Sbjct: 62  KGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQT 119



 Score = 66.1 bits (154), Expect = 1e-12
 Identities = 27/44 (61%), Positives = 35/44 (79%)
 Frame = +2

Query: 41  IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKG 172
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKG
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKG 63


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 177 VFEVSLADLQADSDAERSFRKFRLIADDVQGRNVLCNFHGMDLTSDKLRWMV 332
           VF+V   + + D    R+  +   +A+  Q R V C  H MDL  + LR +V
Sbjct: 86  VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLV 135


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -2

Query: 263 DIVSDKSELAE-RPFRITISLEISKGDLKNTPLLDPQMQFLFP 138
           D+V++  E A   PF   IS  I  G   NTP L   M+ +FP
Sbjct: 339 DLVTEAVEKANMEPF--DISEVILAGGASNTPKLTSLMESIFP 379


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +1

Query: 205 RLIVMRKG-LSASSDLSLTMSRDVMFSA 285
           +L++ +KG L+  S +S+T+ RDV FSA
Sbjct: 188 KLMIHQKGILNLWSGVSVTLWRDVPFSA 215


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 162  PSDAIFVPWVRLTRVVPTCLLVNMDGALTSYQ 67
            PSD+ F  W +L R+V +  +  +   LT YQ
Sbjct: 1905 PSDSTFPLWAKLPRLVISEDVQGISQPLTVYQ 1936


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 141 EQKLHLRV*KGRVFEVS----LADLQADSDAERSFRKFRLIADDVQGRNVLCNFHGMDL 305
           ++KLH +   G   EV+     +DL+++ D +   +    I+D   G + LCN    D+
Sbjct: 214 DEKLHSQSLVGNNCEVNSEDEFSDLESEVDPDELEKAMCPISDMFNGDDELCNIRLYDI 272


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 142 SLGAIDKGGAHLSLGEHGRRFNIVPVFT 59
           +LGAID  G    LGE    F + P F+
Sbjct: 858 NLGAIDSEGVLTKLGEQMSLFPLSPRFS 885


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,401,364
Number of Sequences: 5004
Number of extensions: 26028
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)