Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O03
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    85   2e-17
U50191-6|AAK31554.2|  235|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine re...    26   6.6  
AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical ...    26   6.6  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 36/46 (78%), Positives = 41/46 (89%)
 Frame = +2

Query: 44  VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGACF 181
           VDPF+RK+WYD+KAP+MF  RQVG TL+NRTQGTKIASEGLKG  F
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVF 65



 Score = 81.0 bits (191), Expect = 2e-16
 Identities = 39/61 (63%), Positives = 48/61 (78%)
 Frame = +3

Query: 168 KGRVFEVSLADLQADSDAERSFRKFRLIADDVQGRNVLCNFHGMDLTSDKLRWMVRKWQT 347
           KGRVFEVSL DL   +++E  FRKF+LIA+DVQG+NVL NFH M +T DKL  +V+KW T
Sbjct: 61  KGRVFEVSLGDL---NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHT 117

Query: 348 L 350
           L
Sbjct: 118 L 118


>U50191-6|AAK31554.2|  235|Caenorhabditis elegans Hypothetical
           protein T14B4.8 protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 153 AIFVPWVRLTRVVPTCLLVNMDGALTSYQSLRVKG 49
           + F+P++R  R VPT  +++ +G +  Y +L   G
Sbjct: 119 SFFIPFLRPRRTVPTFSIIDWNGEVLGYYALASDG 153


>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 84  RRPCSPRDKWAPPLSIAPREQKL 152
           R P   ++ + PP  I PREQKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
           protein C38C10.5a protein.
          Length = 1368

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 84  RRPCSPRDKWAPPLSIAPREQKL 152
           R P   ++ + PP  I PREQKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 84  RRPCSPRDKWAPPLSIAPREQKL 152
           R P   ++ + PP  I PREQKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
           protein C38C10.5a protein.
          Length = 1368

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 84  RRPCSPRDKWAPPLSIAPREQKL 152
           R P   ++ + PP  I PREQKL
Sbjct: 86  RMPSKIKEAFIPPAKITPREQKL 108


>AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 67 protein.
          Length = 282

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 175 VFLRSPLLISRLIVMRKGLSASSDLSLTMSR 267
           +FL S LL +  I   KG+++ SD+SL  SR
Sbjct: 20  IFLNSSLLFT--IFCLKGITSKSDMSLVYSR 48


>AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical
           protein Y34D9A.1 protein.
          Length = 413

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 305 EVHAVEIAENITSLDIVSDKSELAE 231
           E+H +E AE++ SL ++  KSE+ +
Sbjct: 63  EMHIIEPAEHMKSLKVLMQKSEIEQ 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,917,050
Number of Sequences: 27780
Number of extensions: 158382
Number of successful extensions: 432
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)