Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O03
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   4.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   4.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   7.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   7.4  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    20   9.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -2

Query: 251  DKSELAERPFRITISLEISKGDLKNTPLLDPQMQFLFPG 135
            DK++          +  I  G   N P L PQ  F  PG
Sbjct: 1098 DKTKETSTVTAAAAATNIRPGTADNKPQLKPQKPFTSPG 1136


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 228 SFRKFRLIADDVQGRNVLCNFHGMDLTSDKLRWMVRK 338
           SFR  R+ A +  GRN    + G      K+   +R+
Sbjct: 410 SFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAIRR 446


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 187 SPLLISRLIVMRKGLSASSDLSLTMSRDVMFSAISTA 297
           S  LI+ LIV+      ++D+SL  + D M   I T+
Sbjct: 443 SAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTS 479


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 91  HVHQETSGHHPCQSHP 138
           H HQ    HHP Q HP
Sbjct: 317 HPHQ----HHPSQYHP 328


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 210 DSDAERSFRKFRLIADDVQGRNVLCN 287
           D  +++  R++RL A+D+     + N
Sbjct: 167 DLTSDKLLRQYRLRAEDINMNTFIAN 192


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 338 FPYHPSELITGEVH 297
           +PYHPS     E H
Sbjct: 390 YPYHPSTQEDSEEH 403


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 338 FPYHPSELITGEVH 297
           +PYHPS     E H
Sbjct: 390 YPYHPSTQEDSEEH 403


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 349 SVCHFLTIHLSLSLVRS 299
           SVC  L + LSLSL  +
Sbjct: 34  SVCERLNLALSLSLTET 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,960
Number of Sequences: 438
Number of extensions: 1971
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)