Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_O02
(251 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 29 0.12
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 26 0.88
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 25 1.5
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 2.0
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 25 2.0
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 2.7
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 24 2.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 24 2.7
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 24 2.7
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 24 2.7
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 24 3.5
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 24 3.5
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 23 4.7
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 23 6.2
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 23 6.2
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 23 6.2
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 23 6.2
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 23 8.2
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 23 8.2
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 28.7 bits (61), Expect = 0.12
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 106 CPYNGVHSIDHYKLHLHLVRC 168
CPY+ H+I ++L HL RC
Sbjct: 57 CPYDHKHTIVRHRLEYHLKRC 77
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 25.8 bits (54), Expect = 0.88
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 112 YNGVHSIDHYKLHLHLVRCGKQHPRAKIAK 201
Y+ S+ ++ H LVR G+ P K+A+
Sbjct: 76 YDSTESMKKFEPHYRLVRVGQAEPIQKVAR 105
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 25.0 bits (52), Expect = 1.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 112 YNGVHSIDHYKLHLHLVRCGKQHPRAKIAK 201
Y+ V ++ ++ H LVR G P K+A+
Sbjct: 76 YDDVEAMKKFEPHYRLVRVGHAEPIQKVAR 105
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 2.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 251 DDISRLHRRHGPSRYGH 201
D I RL + GPSRYG+
Sbjct: 84 DQIRRLDKLLGPSRYGY 100
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 2.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 5 EAAAVISRNQHQRTIFDLQKQLKWQHRDHTIVPIAPTM 118
E+ A +S+ QH R F Q T P AP+M
Sbjct: 308 ESLANVSQQQHHRHPFARQPDYSAHSIPRTAAPYAPSM 345
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 24.2 bits (50), Expect = 2.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 67 LFLKIEDCPLMLISRNHSCCLV 2
LFL +E+ + L + H CC++
Sbjct: 604 LFLSMEENLITLATNRHGCCIL 625
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 24.2 bits (50), Expect = 2.7
Identities = 10/39 (25%), Positives = 16/39 (41%)
Frame = +1
Query: 16 CDF*KSTSKDNLRSSKTIKMAAPRPYDSAYCPYNGVHSI 132
CDF + K N + T + + + YCP V +
Sbjct: 232 CDFVSNCLKKNPKDRATAEYLSKHKFIKKYCPNTSVKEV 270
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 24.2 bits (50), Expect = 2.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 28 KSTSKDNLRSSKTIKMAAPRPYD 96
KSTS D KT K+ AP P D
Sbjct: 446 KSTSVDTKPPKKTQKIDAPAPVD 468
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 31 STSKDNLRSSKTIKMAAPRPYDSAYCPYNGV 123
STS D L S ++++ RPY + NGV
Sbjct: 323 STSLDLLHSIRSVRKNENRPYTISLIGVNGV 353
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 24.2 bits (50), Expect = 2.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 8 AAAVISRNQHQRTIFDLQKQLKWQHRDHTIVPI 106
A+AVI+RN + ++ DL + ++ + VP+
Sbjct: 440 ASAVITRNPSETSLADLSRVPSYKEATRSAVPL 472
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 23.8 bits (49), Expect = 3.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 127 SIDHYKLHLHLVRCGKQHPRAKI 195
SID L +H++ KQHP KI
Sbjct: 764 SIDSDLLLIHVLHLLKQHPHLKI 786
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 23.8 bits (49), Expect = 3.5
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +1
Query: 43 DNLRSSKTIKMAAPRPYDSAYCPYNGVHSIDHYKLHLHLVRCGK 174
+NL K ++ PR C + + H+ H H VR K
Sbjct: 130 ENLPRDKREELGFPRATAYCVCEAFQLPKVKHFLKHYHKVRAKK 173
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 23.4 bits (48), Expect = 4.7
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +1
Query: 58 SKTIKMAAPRPYDSAYCPYNGVHSIDHYKLHLHLVRCGKQHPRA 189
SK + P Y + PY VH I K H V + HP A
Sbjct: 104 SKIMIWKVPEDY-TVMEPYEDVHPIAELKGHSRKVGLVQYHPTA 146
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 23.0 bits (47), Expect = 6.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 98 VPIAPTMGYILLTITNCTC 154
V +AP G++ +TN TC
Sbjct: 404 VGVAPFRGFVQRRLTNATC 422
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 23.0 bits (47), Expect = 6.2
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -3
Query: 222 WTESLRA-FGNFCTRMLFAA 166
W E L +GN TR+LFA+
Sbjct: 392 WEEDLTPQYGNLTTRLLFAS 411
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 23.0 bits (47), Expect = 6.2
Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 70 KMAAPRPYDSAYC-PYNGVHSIDHYKLHLHLVRCGKQH 180
+ A +P+ A P N +HS+D + + ++C +Q+
Sbjct: 982 RTATVQPHKQATAFPPNFIHSLDATHMFMTCLKCSEQN 1019
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 23.0 bits (47), Expect = 6.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 46 CPLMLISRNHSCCLV 2
C L L NH CCLV
Sbjct: 45 CSLSLQPFNHPCCLV 59
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 22.6 bits (46), Expect = 8.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 245 ISRLHRRHGPSRYGHLAIFAR 183
IS LH + P YG++ + +R
Sbjct: 449 ISILHNNNYPLHYGYIGVISR 469
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 22.6 bits (46), Expect = 8.2
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +1
Query: 94 DSAYCPYNGVHSIDHYKLHLHLVRCGKQHP 183
D YCPY + I H K ++ G P
Sbjct: 355 DLHYCPYEDILGIGHAKGFESIIVPGSGEP 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,065,877
Number of Sequences: 5004
Number of extensions: 18537
Number of successful extensions: 58
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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