Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O02
         (251 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0533 + 30052538-30054004                                         27   2.1  
10_08_0033 - 14305552-14305700,14306735-14307153,14307227-14307420     27   2.8  
02_05_0612 + 30348495-30348995,30349679-30350023                       27   2.8  
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485     26   3.7  
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515...    26   3.7  
08_01_0923 - 9095162-9095281,9095402-9095551,9095648-9095783,909...    26   3.7  
09_04_0286 + 16400695-16401369,16401473-16401658,16402115-164025...    25   8.4  
01_01_0153 - 1352982-1353731                                           25   8.4  

>01_06_0533 + 30052538-30054004
          Length = 488

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 250 MIFLDFIDDMDRVATGIWQFLHADAVCR 167
           ++ +D  +D + V  G W+ L + A+CR
Sbjct: 252 LVVVDLAEDEEPVGDGAWRRLRSSAMCR 279


>10_08_0033 - 14305552-14305700,14306735-14307153,14307227-14307420
          Length = 253

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 52  RSSKTIKMAAPRPYDSAYCPYNGVHSIDHYK 144
           R+      AAP  Y +A   YNGV S  +Y+
Sbjct: 129 RAMNAFSRAAPNQYSAAEFDYNGVGSEQNYE 159


>02_05_0612 + 30348495-30348995,30349679-30350023
          Length = 281

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 94  DSAYC--PYNGVHSIDHYKLHLHLVRC 168
           D+A C  P  G++  + Y+LHL L++C
Sbjct: 142 DAAVCGGPLAGINPGEFYRLHLPLIQC 168


>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
          Length = 483

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 247 IFLDFIDDMDRVATGIWQFLHAD 179
           +F  FIDD DR    + +++H D
Sbjct: 49  VFKGFIDDYDRDVVAVKRYIHTD 71


>09_06_0098 +
           20850535-20850612,20851258-20851333,20851474-20851521,
           20851758-20851781,20851875-20851994,20852235-20852310,
           20852385-20852547
          Length = 194

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 190 LHADAVCRTSLNAGAVCNGQ*NVPHCRGNRHYR 92
           L+ D V +T  N  A+C G+  + H   + HY+
Sbjct: 58  LYGDVVPKTVANFRALCTGEEGIGHKGKSLHYK 90


>08_01_0923 -
           9095162-9095281,9095402-9095551,9095648-9095783,
           9095916-9095995,9096112-9096269,9096358-9096612,
           9096804-9097205,9097287-9097408,9097623-9097741,
           9098506-9098597,9098763-9098934
          Length = 601

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 50  FDLQKQLKWQHRDHTIVPIAPTMGYI 127
           F L K L  Q   H+++PI  T GY+
Sbjct: 444 FGLAKWLPKQWTHHSVIPIEGTFGYL 469


>09_04_0286 +
           16400695-16401369,16401473-16401658,16402115-16402575,
           16402678-16402836,16402914-16403265,16403360-16403653
          Length = 708

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 46  NLRSSKTIKMAAPRPYDSAYCPYNGVHSIDH 138
           +L  S  I+   P P  S  CPY+     DH
Sbjct: 568 SLGDSDAIRPPCPFPMHSEDCPYSYTRQCDH 598


>01_01_0153 - 1352982-1353731
          Length = 249

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 144 TAPAFSEVRQTASACKNCQ 200
           T     EV++ A ACK+CQ
Sbjct: 201 TCRCMDEVKECADACKDCQ 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,283,436
Number of Sequences: 37544
Number of extensions: 134408
Number of successful extensions: 335
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)