Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O01
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   0.33 
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   1.3  
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    25   1.3  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    24   2.3  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    23   5.4  
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    23   7.1  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    23   7.1  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    22   9.4  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    22   9.4  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 138 FTSIYISGSDTRVALNATAPVEFTAATLLDDDPLSYYNPRADYL 7
           F  IY +GS+    L+   P++     L DDD   Y   + D+L
Sbjct: 471 FQKIYFTGSENCQKLSKQIPLDECNEALFDDDNGDYKAIQGDHL 514


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 173 NSVNYLFYSELYLQVYISADLTHVWH 96
           NS+ +LF SEL+ ++ ++    H+ H
Sbjct: 413 NSIYHLFQSELFPKIVVNESRHHIPH 438


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 93  NATAPVEFTAATLLDDDPLSYYNPRADYL 7
           NA+ P+   AA LL  +P +YY    DY+
Sbjct: 115 NASDPLNGEAAALLLREPNTYYAKVRDYI 143


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 44  SSSRSVAAVNSTGAVALSATRVSDPLIYILVNKVQNRI 157
           ++  +V+   S+  V  S  ++ DP  +I  N V+NRI
Sbjct: 136 TADTTVSHSTSSSNVPRSLNKIHDPSRFIKDNDVENRI 173


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -2

Query: 138 FTSIYISGSDTRVALNATAPVEFTAATLLDDDPLSYYNPRA 16
           +  IY    DT   +    P  +     +++ PL+Y NP A
Sbjct: 569 YIRIYQDPDDTNSHIGCDPP-GYPTTKYIEEHPLAYKNPNA 608


>SPAC19D5.06c |din1||Dhp1p-interacting protein
          Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 57 LLDDDPLSYYNP 22
          LLDD  LSYY P
Sbjct: 36 LLDDSKLSYYYP 47


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 52  KERCGCKFHWCCRVECHTC 108
           KE CGCK       +C +C
Sbjct: 27  KESCGCKSSAVDNCKCSSC 45


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 44  SSSRSVAAVNSTGAVA 91
           SSS S + +NSTG+V+
Sbjct: 132 SSSNSTSTMNSTGSVS 147


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 101 WHSTRQHQWNLQPQRSLMMILCRIITLVPII 9
           WH+ RQ Q++L         L +   L+PII
Sbjct: 136 WHARRQKQFHLMKPAEERKQLPKYDYLLPII 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,350
Number of Sequences: 5004
Number of extensions: 10216
Number of successful extensions: 33
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)