Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_O01
         (178 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559...    28   0.93 
09_04_0388 + 17234485-17234583,17234710-17234893,17235252-172360...    28   1.2  
07_03_0861 + 22072041-22072789,22074065-22074164                       27   2.1  
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    26   3.7  

>01_06_0293 -
           28254673-28254878,28255189-28255306,28255767-28255961,
           28256701-28256800,28256887-28256972,28257078-28257239,
           28257965-28258101,28258233-28258281,28258688-28258746,
           28258862-28258896,28259384-28259433,28260173-28260332,
           28260898-28260963,28261065-28261162,28261649-28261696,
           28262114-28262242,28262667-28262769,28262858-28262954,
           28263181-28263241,28263659-28263740,28263845-28263962,
           28264039-28266325
          Length = 1481

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +1

Query: 4   LQIIGTRVIIRQRIIIK--ERCGCKFH 78
           L +I T V+ ++RI+++   RCGCK H
Sbjct: 231 LCLIATYVVGKERILLEVARRCGCKIH 257


>09_04_0388 +
           17234485-17234583,17234710-17234893,17235252-17236057,
           17236148-17236432
          Length = 457

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 122 SADLTHVWHSTRQHQWNLQPQRSLMMILCRIITLVPIIC 6
           SA +THVW     H  ++ PQ    M L  ++TL+ + C
Sbjct: 59  SAGVTHVWLPPPTH--SVSPQGQQAMHLLHLVTLLFVAC 95


>07_03_0861 + 22072041-22072789,22074065-22074164
          Length = 282

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 131 VYISADLTHVWHSTRQHQWNL 69
           +++ + LT  WHS+R   W+L
Sbjct: 70  IFVFSSLTEEWHSSRSVSWSL 90


>01_04_0124 + 16359695-16359734,16360217-16360453,16361133-16362104,
            16362211-16362398,16362564-16363942,16364024-16365047,
            16365171-16365566,16367484-16367999,16368085-16368226,
            16369409-16369553,16371351-16371432,16371851-16371895,
            16372018-16372140
          Length = 1762

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 166  LIIYSILNFIYKYIYQRI*HTCG 98
            ++IY+ LN + +YIYQ +   CG
Sbjct: 968  VLIYTELNILSQYIYQIVIQHCG 990


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,234,234
Number of Sequences: 37544
Number of extensions: 60643
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 14,793,348
effective HSP length: 38
effective length of database: 13,366,676
effective search space used: 267333520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)