Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N24
(299 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 57 3e-09
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 54 1e-08
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 54 1e-08
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 52 1e-07
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 46 7e-06
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 44 3e-05
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 43 4e-05
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 43 4e-05
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 43 4e-05
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 43 4e-05
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 43 4e-05
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 41 1e-04
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 41 1e-04
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 41 1e-04
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 41 1e-04
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 41 1e-04
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 33 0.038
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 32 0.088
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 32 0.088
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 32 0.088
Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical pr... 31 0.15
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 31 0.20
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 31 0.20
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 31 0.20
AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical ... 29 0.62
U97550-5|AAK18982.2| 497|Caenorhabditis elegans Hypothetical pr... 27 2.5
Z82060-6|CAB04887.1| 301|Caenorhabditis elegans Hypothetical pr... 26 4.4
AF067217-5|AAO38635.1| 856|Caenorhabditis elegans Hypothetical ... 26 5.8
AF067217-4|AAF99978.1| 887|Caenorhabditis elegans Hypothetical ... 26 5.8
AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi doma... 26 5.8
AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi doma... 26 5.8
AC084159-8|AAK39361.2| 655|Caenorhabditis elegans Hypothetical ... 26 5.8
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 25 7.6
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 56.8 bits (131), Expect = 3e-09
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +3
Query: 81 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWXX 254
KK+K + PKR SAYM W ++R ++K + G V ++AKKGG WK+M DK W
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEE 605
Query: 255 XXXXXXXQYAKDLE 296
+Y K+++
Sbjct: 606 KAEEDKSRYEKEMK 619
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/70 (37%), Positives = 36/70 (51%)
Frame = +3
Query: 84 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWXXXXX 263
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DKS W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 264 XXXXQYAKDL 293
+Y D+
Sbjct: 79 DDKKRYEVDI 88
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 54.4 bits (125), Expect = 1e-08
Identities = 26/70 (37%), Positives = 36/70 (51%)
Frame = +3
Query: 84 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWXXXXX 263
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DKS W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 264 XXXXQYAKDL 293
+Y D+
Sbjct: 79 DDKKRYEVDI 88
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 51.6 bits (118), Expect = 1e-07
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +3
Query: 81 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMK--DKSIWXX 254
KK K ++PKR +AY++W N+ R +K + G + ++AKK G WKSM DK W
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWND 610
Query: 255 XXXXXXXQYAKDLE 296
+Y +++
Sbjct: 611 KAAQDKARYEAEMK 624
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 45.6 bits (103), Expect = 7e-06
Identities = 18/50 (36%), Positives = 33/50 (66%)
Frame = +3
Query: 90 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 239
K D+ KRPM+A+M+W R+++ E+P + +EI+K+ G WK + ++
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 43.6 bits (98), Expect = 3e-05
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 90 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 239
K ++ KRPM+A+M+W R +I P + EI+K+ G W+S+ D+
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 43.2 bits (97), Expect = 4e-05
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +3
Query: 99 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 239
D KRPM+A+M+W R ++ ++P + +EI+K+ G WK + ++
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 78 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWX 251
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK + K ++
Sbjct: 125 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 184
Query: 252 XXXXXXXXQYAKDLES 299
+YA ++ +
Sbjct: 185 QKAQADKDRYADEMRN 200
Score = 32.7 bits (71), Expect = 0.050
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 42 HQFKNNFKIFAIRKKNKMTDKPKR-PMSAYMLWLNSAREQIKSEHPG--LKVTEIAKKGG 212
HQ N M P R S Y ++ E+ K ++P ++VTEI+KK
Sbjct: 22 HQLPNPSATMYQATPRDMGKPPVRGKTSPYGFFVKMCYEEHKKKYPNENVQVTEISKKCS 81
Query: 213 EMWKSMKD 236
E WK+M D
Sbjct: 82 EKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 78 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWX 251
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK + K ++
Sbjct: 124 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 183
Query: 252 XXXXXXXXQYAKDLES 299
+YA ++ +
Sbjct: 184 QKAQADKDRYADEMRN 199
Score = 32.3 bits (70), Expect = 0.067
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 120 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 236
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 78 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWX 251
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK + K ++
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 185
Query: 252 XXXXXXXXQYAKDLES 299
+YA ++ +
Sbjct: 186 QKAQADKDRYADEMRN 201
Score = 32.3 bits (70), Expect = 0.067
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 120 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 236
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 78 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK--SMKDKSIWX 251
++ K PKR +SA+ + R +I++ HP KV ++A++ G+MWK + K ++
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYE 185
Query: 252 XXXXXXXXQYAKDLES 299
+YA ++ +
Sbjct: 186 QKAQADKDRYADEMRN 201
Score = 32.3 bits (70), Expect = 0.067
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 120 SAYMLWLNSAREQIKSEHPG--LKVTEIAKKGGEMWKSMKD 236
S Y ++ E+ K ++P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 78 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 236
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 78 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 236
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 78 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 236
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 78 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 236
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 78 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 236
R + K + KRPM+A+M+W R +I +P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 33.1 bits (72), Expect = 0.038
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 105 PKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD--KSIWXXXXXXXXXQ 278
P+RP+ YM + ++++E+P ++ +I K G+ W + D KS +
Sbjct: 26 PERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHEYELEKAD 85
Query: 279 YAKDLE 296
Y K ++
Sbjct: 86 YEKQMK 91
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 31.9 bits (69), Expect = 0.088
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 93 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 239
MT K + S Y+L+ R++I E+P E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 31.9 bits (69), Expect = 0.088
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 93 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 239
MT K + S Y+L+ R++I E+P E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 31.9 bits (69), Expect = 0.088
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 93 MTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 239
MT K + S Y+L+ R++I E+P E++K G WK + ++
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
>Z68006-1|CAA91998.1| 251|Caenorhabditis elegans Hypothetical
protein K09C8.2 protein.
Length = 251
Score = 31.1 bits (67), Expect = 0.15
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 256 FSSQILLSFIDFHISPPFLAISVTFSPGCSDLICSLALLS 137
F LL+++ FH+ F A+SV+F + +C + LLS
Sbjct: 37 FIMACLLNYVSFHVGNDFYAVSVSFVHVGAVFVCIVILLS 76
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +3
Query: 78 RKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 230
R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S+
Sbjct: 831 RRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 884
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +3
Query: 78 RKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 230
R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S+
Sbjct: 831 RRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 884
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +3
Query: 78 RKKNKMT-DKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 230
R+++K++ ++P +RPM+A+M++ R + ++P ++K GE W S+
Sbjct: 66 RRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 119
>AC024777-1|AAF60563.1| 133|Caenorhabditis elegans Hypothetical
protein Y42H9AR.2 protein.
Length = 133
Score = 29.1 bits (62), Expect = 0.62
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -2
Query: 232 FIDFHISPPFLAISVTFSPGCS-DLICSLALLSHSI*ADIG-RFGLSVILFFF-LMAKIL 62
FI S + IS+ + GCS +I A + + +G F L + L F LMA I
Sbjct: 4 FITATYSADAVLISLLITTGCSASIILFAATTKKDLTSCLGVAFILGICLMLFGLMACIF 63
Query: 61 KLFLNW 44
+FLNW
Sbjct: 64 CIFLNW 69
>U97550-5|AAK18982.2| 497|Caenorhabditis elegans Hypothetical
protein T20F7.7 protein.
Length = 497
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 265 LAAFSSQILLSFIDFHISPPFLAISVTFSPGCSDLICS 152
L A SS L+F+ FH + F A+ + GC+ I S
Sbjct: 196 LLAQSSMKTLAFLPFHHASGFWALLICLLEGCTTYIMS 233
>Z82060-6|CAB04887.1| 301|Caenorhabditis elegans Hypothetical
protein T27F6.8 protein.
Length = 301
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 226 DFHISPPFLAISVTFSPGCSDLI 158
D H+ F+A TF P CSD++
Sbjct: 197 DLHLDSGFIADRDTFWPKCSDIV 219
>AF067217-5|AAO38635.1| 856|Caenorhabditis elegans Hypothetical
protein F56A6.1b protein.
Length = 856
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 90 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGE 215
K+T KP +P+ Y + +N + +++++ AKKG E
Sbjct: 49 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTE 90
>AF067217-4|AAF99978.1| 887|Caenorhabditis elegans Hypothetical
protein F56A6.1a protein.
Length = 887
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 90 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGE 215
K+T KP +P+ Y + +N + +++++ AKKG E
Sbjct: 49 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTE 90
>AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform c protein.
Length = 887
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 90 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGE 215
K+T KP +P+ Y + +N + +++++ AKKG E
Sbjct: 49 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTE 90
>AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform a protein.
Length = 913
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 90 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGE 215
K+T KP +P+ Y + +N + +++++ AKKG E
Sbjct: 75 KLTIKPNQPIYKYAVQVNYVFRKPDGTEATIEMSKSAKKGTE 116
>AC084159-8|AAK39361.2| 655|Caenorhabditis elegans Hypothetical
protein Y73B3A.3 protein.
Length = 655
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +3
Query: 63 KIFAIRKK--NKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 236
K F+I KK N + + Y+ LN + K P +TEI G E+W D
Sbjct: 541 KCFSICKKQQNYLINTEFETSEEYLTHLNQLVQNTKKSIP---ITEIQSIGCEVWADQLD 597
Query: 237 KSI 245
+ +
Sbjct: 598 RQL 600
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 84 KNKMTDKPKRPMSAYMLWLNSAREQIKSE--HPGLKVTEIAKKGGEMWKSM 230
K K D K+P++A+M ++ R+ + E + + E+ K+ G+ W +
Sbjct: 184 KAKKDDHVKKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDL 234
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,774,523
Number of Sequences: 27780
Number of extensions: 129559
Number of successful extensions: 416
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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