Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N23
(389 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 152 2e-38
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 144 4e-36
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 2.4
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 26 2.4
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 25 3.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 4.1
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 4.1
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 4.1
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 4.1
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.5
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 5.5
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 5.5
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 24 7.2
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 24 7.2
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 24 7.2
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 24 7.2
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 24 7.2
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 24 7.2
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 24 7.2
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 24 7.2
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom... 24 9.5
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 24 9.5
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 152 bits (369), Expect = 2e-38
Identities = 75/124 (60%), Positives = 90/124 (72%)
Frame = +3
Query: 18 VTKALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPKYPRKSLPKRNRMDAYNII 197
V KA AQ+ V KG H RK+RTS FRRPKT E R+PKY RKS+P +R+D Y II
Sbjct: 3 VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62
Query: 198 KYPLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDINVAKVNTLIRPDGEKKAY 377
P+ SE+AMKKIED+NTLVF VH +NK IK AVKKLY ++ K+NTLIRP+G KKA+
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAF 122
Query: 378 VKAS 389
VK S
Sbjct: 123 VKLS 126
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 144 bits (349), Expect = 4e-36
Identities = 71/124 (57%), Positives = 87/124 (70%)
Frame = +3
Query: 18 VTKALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPKYPRKSLPKRNRMDAYNII 197
V KA AQ+ V KG H +K+RTS FRRPKT + R+PKY RKS+ R+D Y II
Sbjct: 3 VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62
Query: 198 KYPLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDINVAKVNTLIRPDGEKKAY 377
P+ SE+AMKKIED+NTLVF VH +NK IK AV+KLY + K+NTLIRP+G KKA+
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAF 122
Query: 378 VKAS 389
VK S
Sbjct: 123 VKLS 126
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.8 bits (54), Expect = 2.4
Identities = 9/51 (17%), Positives = 25/51 (49%)
Frame = +3
Query: 177 MDAYNIIKYPLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDINV 329
+ A+++ ++ E ++ +DN T I H S ++ + A +++ +
Sbjct: 1090 LQAFDLSRFEFIKEIFLELYDDNETNASIAHQISTQNGLDATETSFFELQI 1140
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 2.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 136 NQSILESHYPN-GIAWMPITSSNTHSLRKL 222
NQ +L G+ W+ T + HSLRKL
Sbjct: 4 NQDVLTKEKGGMGVIWLAATLGSKHSLRKL 33
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 382 FTYAFFSPSGLISVLTLATLMS 317
F Y FF P G + V L T++S
Sbjct: 11 FEYEFFGPIGALGVTVLTTVVS 32
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 4.1
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 111 PKTFEPPRQPKYPRKSLPKRN-RMDAYN 191
P+T +PP QP YP K+ K + D YN
Sbjct: 428 PQT-QPPFQPPYPSKADEKNSYHSDLYN 454
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.0 bits (52), Expect = 4.1
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 145 ILESHYPNGIAWMPITSSNTHSLRKLP 225
++E H N AW P+ ++ S+ LP
Sbjct: 1745 VVEKHTRNHAAWQPVIATILDSILNLP 1771
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 4.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 386 SLYVRLLLAIRPYKCVNFSNI 324
SLYV +L + PY+C+ ++
Sbjct: 441 SLYVTVLCVLAPYRCLGIGSL 461
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.0 bits (52), Expect = 4.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 377 VRLLLAIRPYKCVNFSN 327
VR+ LAI +KC NFSN
Sbjct: 281 VRMSLAIGLHKCKNFSN 297
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 24.6 bits (51), Expect = 5.5
Identities = 15/61 (24%), Positives = 27/61 (44%)
Frame = +3
Query: 66 GNRVRKIRTSVHFRRPKTFEPPRQPKYPRKSLPKRNRMDAYNIIKYPLTSEAAMKKIEDN 245
GN + + S+ F KT P+ K S+P + + + Y L S+ +K I +
Sbjct: 460 GNELLPLFESLRFENRKTTSKPKAKKTLVTSIPTKPHQASVEKV-YDLNSKINLKNIPEQ 518
Query: 246 N 248
+
Sbjct: 519 S 519
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 132 RQPKYPRKSLPKRNRMDAYNIIKY-PLTSE 218
RQP+ ++S D++ I+KY PLT E
Sbjct: 108 RQPEREKRSSAILKYFDSFEILKYNPLTDE 137
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 24.6 bits (51), Expect = 5.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 105 RRPKTFEPPRQPKYPRKSLPK 167
++P TF P P+Y + +PK
Sbjct: 728 KKPPTFLKPNSPEYAKTVIPK 748
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 344 CVNFSNINVIKFLYCSLDVMFVGTSMNNEYQGIVILNLFHGSF 216
C F I+V+ F + + MN + G+ ++NL GSF
Sbjct: 496 CAMFG-ISVVVFALMVILRPYATKHMNTLHIGVALMNLISGSF 537
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 380 YVRLLLAIRPYKCVNFSNINVIKFLYCSLDVM 285
Y LL I Y C I+V +F+Y S+ M
Sbjct: 68 YQSPLLLILNYCCELLGGISVTRFVYTSISTM 99
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 24.2 bits (50), Expect = 7.2
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +3
Query: 225 MKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDINVAKVNTLIRPDGEKKAYVKA 386
+ KI ++ +H S+K H A YDI + N + K AY K+
Sbjct: 460 LTKIAPSHRPTVYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAYEFKNKMAYDKS 513
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 24.2 bits (50), Expect = 7.2
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -1
Query: 263 NEYQGIVILNLFHGSFRSEWV 201
N++QGI++ + +G F W+
Sbjct: 657 NKHQGIILFDKVYGVFSENWL 677
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +3
Query: 57 GEHGNRVRKIRTSVHF-----RRPKTFEPPRQPKYPRK 155
G +G +V I+ F + PK +PPR+ ++ RK
Sbjct: 287 GIYGGKVTSIKEKGKFFSRNKKAPKVVKPPRKSRFKRK 324
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.2 bits (50), Expect = 7.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 350 YKCVNFSNINVIKFLYCS 297
+ C+ F N+N+ K L CS
Sbjct: 168 FGCIKFGNLNLDKALICS 185
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 240 DNNTLVFI--VHTSSNKHHIKAAVKKLYDINVAKVNTLIRPD 359
DNN L + + S+N A+KK +D+ V ++ L P+
Sbjct: 259 DNNLLELLERLDVSNNSDVAVLAIKKFFDVRVDSLSQLEFPE 300
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 142 SILESHYPNGIAWMPITSSNTHSLRKLP*KRLRITIPWYSLFILVPTNIT 291
S++E+HY + T + +R+ +RIT P++ L+ TN++
Sbjct: 206 SVIENHYNTFV-----TKQTFYEIREAGLDHVRITFPYWILYSNEITNVS 250
>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 274
Score = 23.8 bits (49), Expect = 9.5
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +3
Query: 213 SEAAMKKIEDNN--TLVFIVHTSSNKHHIKAAVKKLY 317
+E + I+D N T VF +HT +NK+ + V ++
Sbjct: 191 AEKMLHSIKDFNQKTTVFHMHTRNNKYDTREIVDDIF 227
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 23.8 bits (49), Expect = 9.5
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 45 KVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPKYPRKS-LPKR 170
K+++ E + RKI+ + +T +PP++P S +PK+
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVPKK 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,727
Number of Sequences: 5004
Number of extensions: 32461
Number of successful extensions: 94
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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