Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N23
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844... 161 1e-40
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 160 3e-40
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805... 29 0.99
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 28 2.3
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578... 27 4.0
01_06_1615 - 38652493-38652668,38652896-38653043,38653125-386533... 27 7.0
01_03_0060 - 12112595-12113974,12115970-12116077 26 9.2
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836... 26 9.2
>04_04_0407 -
24983491-24983575,24983655-24984015,24984367-24984406,
24984466-24984468
Length = 162
Score = 161 bits (392), Expect = 1e-40
Identities = 78/120 (65%), Positives = 91/120 (75%)
Frame = +3
Query: 24 KALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPKYPRKSLPKRNRMDAYNIIKY 203
+ALKA + V G +KIRTSV F RPKT + R PKYPR S P RN++D Y I+KY
Sbjct: 26 QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKY 85
Query: 204 PLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDINVAKVNTLIRPDGEKKAYVK 383
PLT+E+AMKKIEDNNTLVFIV ++K IKAAVKK+YDI KVNTLIRPDG+KKAYVK
Sbjct: 86 PLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVK 145
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 160 bits (389), Expect = 3e-40
Identities = 77/120 (64%), Positives = 91/120 (75%)
Frame = +3
Query: 24 KALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPKYPRKSLPKRNRMDAYNIIKY 203
+ALK + V G + +KIRTSV F RPKT + R PKYPR S P RN++D Y I+KY
Sbjct: 16 QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKY 75
Query: 204 PLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDINVAKVNTLIRPDGEKKAYVK 383
PLT+E+AMKKIEDNNTLVFIV ++K IKAAVKK+YDI KVNTLIRPDG+KKAYVK
Sbjct: 76 PLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVK 135
>08_02_0094 +
12277756-12278574,12280314-12280418,12280487-12280543,
12280969-12281041,12281525-12281703,12281788-12281961,
12282041-12282326,12282433-12282509,12282599-12282668,
12282751-12282822,12282920-12283155,12283240-12283374,
12283466-12283761,12284237-12284408,12284510-12284608,
12284704-12284835,12284950-12285050,12285426-12285615,
12285723-12285761
Length = 1103
Score = 29.5 bits (63), Expect = 0.99
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 252 LVFIVHTSSNKHHIKAAVKKLYDINVAKVNTLIRP 356
L+ +H H IK +KK YD + +K +I+P
Sbjct: 300 LILRMHRKEVVHEIKRHLKKSYDFHTSKCTLIIKP 334
>08_01_0344 +
3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 12 KPVTKALKAQRKVVKGEHGNRVRKIRTSVHFRRPKTFEPPRQPK 143
K V K +K + + +HG+ + K+ + FRR P RQ K
Sbjct: 351 KEVFKVIKRKPSISYEKHGSVLGKVHGEIKFRRVHFAYPSRQDK 394
>11_04_0331 +
16456577-16456579,16456664-16456911,16457625-16457812,
16458293-16458489,16458579-16458768,16458865-16459084,
16459169-16459376,16459508-16459642,16459725-16459916,
16459999-16460171,16460266-16460454,16460539-16460655,
16460734-16460818,16460900-16461052,16461135-16461260,
16461391-16461573,16461823-16461984,16462098-16462214
Length = 961
Score = 27.5 bits (58), Expect = 4.0
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
Frame = +3
Query: 102 FRRPK----TFEPPRQPKYPRK---------SLPKRNRMDAYNIIKYPLTSEAAMKKIED 242
FRRPK F PPR+P+ PR S P R++ Y+ P+T + ED
Sbjct: 154 FRRPKRHRANFRPPREPRTPRSDDDGDGATPSSPGRSQRGMYSGGDVPMTDQTDDDPYED 213
>01_06_1615 -
38652493-38652668,38652896-38653043,38653125-38653340,
38653572-38653701,38653801-38653823,38654238-38654292,
38654370-38654428,38654516-38654569
Length = 286
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 105 RRPKTFEPPRQPKYPRKSLPKRNRMDAYNIIKYPLTSEAAMKKIEDNNT 251
R+ F+P P+ PRKS+P++ ++ I E MK++++ T
Sbjct: 17 RKKLKFKPKVPPQKPRKSVPEKPNLEQSKPI-----DEELMKRLKEGTT 60
>01_03_0060 - 12112595-12113974,12115970-12116077
Length = 495
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 153 KSLPKRNRMDAYNIIKYPLTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAV--KKLY 317
+ L + R+D Y+I + P + ++ LV I +KHH++A K+LY
Sbjct: 59 EQLSRPARLDGYSIYRVPASVRDSVDNKHYEPRLVSIGPYHRSKHHLRAMEDRKRLY 115
>01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,
8367403-8367550,8367630-8367873,8368105-8368407,
8368639-8368851,8368927-8369002,8369533-8369561,
8369610-8369984,8371784-8371927,8374053-8374086
Length = 1546
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 140 WLP-WRLKSFGSSEMH*SANLTHSIAMFTFNYLPLCFKSFSN 18
WLP + + G S H +AN+ F+F + K+FSN
Sbjct: 1155 WLPLYHSHTSGKSSGHITANIAGMCRHFSFAEIKAATKNFSN 1196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,076,696
Number of Sequences: 37544
Number of extensions: 197983
Number of successful extensions: 564
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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