Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N23
(389 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 1.2
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 1.6
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 2.2
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 2.9
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 3.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 3.8
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 3.8
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 3.8
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 21 6.6
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 20 8.7
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 20 8.7
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 20 8.7
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.0 bits (47), Expect = 1.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 306 KKLYDINVAKVNTLIRPDG 362
K+LYD ++ N LIRP G
Sbjct: 22 KRLYDDLLSNYNRLIRPVG 40
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.6 bits (46), Expect = 1.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 249 TLVFIVHTSSNKHHIKAAVKKLYDINVAKVNTLIRP 356
T++ I+ S+ H K+LYD ++ N LIRP
Sbjct: 5 TIILIL--SARICHGNPDAKRLYDDLLSNYNRLIRP 38
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 22.2 bits (45), Expect = 2.2
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 246 NTLVFIVHTSSNK-HHIKAAVKKLYDINVAKVNTLIRP 356
NTL I + K K+LYD ++ N LIRP
Sbjct: 14 NTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRP 51
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 21.8 bits (44), Expect = 2.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 332 SNINVIKFLYCSLDVMF 282
+N+N I L+C LDV +
Sbjct: 278 ANLNFILHLFCLLDVQW 294
Score = 21.4 bits (43), Expect = 3.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 207 LTSEAAMKKIEDNNTLVFIVHTSSNKHHIKAAVKKLYDINVAKVNTLIR 353
L +E + + +NNT IVH S ++ I + + ++ N L+R
Sbjct: 192 LDTEQILDDMYNNNTEWEIVHMSHSESTIDSKFGLGFTTDLLSYNILLR 240
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 3.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 306 KKLYDINVAKVNTLIRP 356
K+LYD ++ N L+RP
Sbjct: 30 KRLYDDLLSNYNKLVRP 46
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.4 bits (43), Expect = 3.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 306 KKLYDINVAKVNTLIRP 356
K+LYD ++ N L+RP
Sbjct: 30 KRLYDDLLSNYNKLVRP 46
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.4 bits (43), Expect = 3.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 306 KKLYDINVAKVNTLIRP 356
K+LYD ++ N L+RP
Sbjct: 26 KRLYDDLLSNYNKLVRP 42
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 21.4 bits (43), Expect = 3.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 61 NMAIECVRFALQCISEDPKLLSLQGNQSILE 153
N +EC+RF + IS+ +L + I++
Sbjct: 808 NQGLECLRFLNEVISDFDAILDQNKFKDIIK 838
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 20.6 bits (41), Expect = 6.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 126 PPRQPKYPRKSLPKRNR 176
PPR+P PR + K R
Sbjct: 138 PPREPGTPRINFTKLKR 154
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 20.2 bits (40), Expect = 8.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 355 GLISVLTLATLMS 317
G+ +VLT+ TLMS
Sbjct: 256 GVTTVLTMTTLMS 268
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 20.2 bits (40), Expect = 8.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 355 GLISVLTLATLMS 317
G+ +VLT+ TLMS
Sbjct: 256 GVTTVLTMTTLMS 268
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 20.2 bits (40), Expect = 8.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -2
Query: 355 GLISVLTLATLMS 317
G+ +VLT+ TLMS
Sbjct: 195 GVTTVLTMTTLMS 207
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,996
Number of Sequences: 438
Number of extensions: 2201
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9514659
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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