Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N22
         (212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    23   4.2  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    23   4.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    23   5.5  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   7.3  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    23   7.3  

>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 198 TNGFPYTDSIKRQL 157
           T+ FPYTDS++R L
Sbjct: 294 TSIFPYTDSMRRYL 307


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 198 TNGFPYT-DSIKRQLSNYSTEQ*LIKSISIINVHIFY*RVPATPPAF 61
           T  + YT D ++ +  +   E    +  + +   + Y RV +TPPAF
Sbjct: 193 TKFYDYTLDEMENETESGQVETTPTRLATSLGSPVLYGRVESTPPAF 239


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 101  IYFTSGCPRLRPRFIRSVHMTFHL 30
            IY  SG P +   FI  +H T H+
Sbjct: 1122 IYQQSGIPSVDESFISLIHSTDHV 1145


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 39  RHMHRTYETRAESRAPASKI 98
           +  HR+  +RA SR+P S I
Sbjct: 207 KSFHRSRYSRARSRSPGSNI 226


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +1

Query: 67  GRSRGH-PLVKYMYVNY*YRF 126
           G+  GH P+ K  YVN  YRF
Sbjct: 156 GQGSGHHPMDKSRYVNANYRF 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 819,495
Number of Sequences: 5004
Number of extensions: 12012
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)