Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N22
         (212 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50796-1|CAA90668.1|  490|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z50796-1|CAA90668.1|  490|Caenorhabditis elegans Hypothetical
           protein T05A6.4 protein.
          Length = 490

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 132 LIKSISIINVHIFY*RVPATPPAFHTFC 49
           L+K IS  N+H    + P  P    TFC
Sbjct: 318 LLKKISFSNIHSKLCQTPYIPKGLDTFC 345


>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 43  ICTERMKRGRSRGHPLVK 96
           ICT + ++ + RG PLVK
Sbjct: 169 ICTNKYQKMQDRGEPLVK 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,485,056
Number of Sequences: 27780
Number of extensions: 66223
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)