Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N21
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    28   0.33 
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   5.4  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    24   5.4  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   5.4  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    24   7.1  
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo...    24   7.1  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    23   9.4  

>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 180 SCITNASQDTEKVFNILLL*FRFKCYLNVSSTHK 281
           S + N +  T  VF++ +L FRFK  +N +S+H+
Sbjct: 205 SILRNLNVPTRLVFSLQVLSFRFKGAINEASSHE 238


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 100 VSAQIPISGDYGDKTAARRISNLRSVYHVSPT 195
           V + +     YGD   A  ISN+   +H S T
Sbjct: 47  VISSMTFLNQYGDSVFAPSISNIAEQFHASRT 78


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 100 VSAQIPISGDYGDKTAARRISNLRSVYHVSPT 195
           V + +     YGD   A  ISN+   +H S T
Sbjct: 47  VISSMTFLNQYGDSVFAPSISNIAEQFHASRT 78


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 100 VSAQIPISGDYGDKTAARRISNLRSVYHVSPT 195
           V + +     YGD   A  ISN+   +H S T
Sbjct: 47  VISSMTFLNQYGDSVFAPSISNIAEQFHASRT 78


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 163 C*CAWPPFCRRN 128
           C   WPPFC  N
Sbjct: 325 CLIGWPPFCSEN 336


>SPCC1739.05 |set5||histone lysine methyltransferase Set5
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 319

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 225 ILLL*FRFKCYLNVSSTHKNK 287
           ILL  F FKCY +V S  + K
Sbjct: 153 ILLEHFGFKCYCSVCSVEERK 173


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 120 YRYLSTNLAFTPAFHCFPIVSFLWVIDIL 34
           Y  L   L FT AF C   V+FL+++D L
Sbjct: 71  YPILRWPLMFT-AFLCLTFVAFLYLLDRL 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,586
Number of Sequences: 5004
Number of extensions: 24743
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)