Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N21
         (336 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF407828-1|ABN58755.1|  101|Homo sapiens immunoglobulin heavy ch...    33   0.22 
EF175425-1|ABM53257.1|  101|Homo sapiens immunoglobulin heavy ch...    30   1.5  
EF091906-1|ABK80724.1|  103|Homo sapiens immunoglobulin heavy ch...    30   1.5  
AF281301-1|AAF91460.1|  734|Homo sapiens leukocyte surface prote...    29   3.6  

>EF407828-1|ABN58755.1|  101|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 101

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 94  RQVSAQIPISGDYGDKTAARRISNLRS----VYHVSPTPLKIQKKCSIYYYYDL 243
           ++   ++ I+ D    TA   +S+LRS    VY+ +  PL     C  YYYY +
Sbjct: 40  QKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCASPPLCSSTSCYYYYYYGM 93


>EF175425-1|ABM53257.1|  101|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 101

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +1

Query: 94  RQVSAQIPISGDYGDKTAARRISNLRS----VYHVSPTPLKIQKKCSIYYYY 237
           ++   ++ I+ D    TA   +S+LRS    VY+ + T + +    +IYYYY
Sbjct: 39  QKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCAGTLIGVPAAYTIYYYY 90


>EF091906-1|ABK80724.1|  103|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 103

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +1

Query: 94  RQVSAQIPISGDYGDKTAARRISNLRS----VYH-VSPTPLKIQKKCSIYYYYDLGSNV 255
           ++   ++ I+ D    TA   +S+LRS    VY+  SP P  I    + YYYY  G +V
Sbjct: 39  QKFQGRVTITADESTSTAYMELSSLRSEDTAVYYCASPGPQDIVVVPAAYYYYYYGMDV 97


>AF281301-1|AAF91460.1|  734|Homo sapiens leukocyte surface protein
           precursor protein.
          Length = 734

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 100 VSAQIPISGDYGDKTAARRISNLRSVYHVSPTPLKIQKKC-SIYYYYDLGSNVILMCRVP 276
           V A +  SG+Y  K  + RIS + S+  V+ T L  + K  S + + D G  + L C +P
Sbjct: 292 VMAMVEHSGNYTCKVESSRISKVSSIV-VNITELFSKPKLESSFTHLDQGERLNLSCSIP 350


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,443,365
Number of Sequences: 237096
Number of extensions: 897834
Number of successful extensions: 1147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)