Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N20
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   115   3e-27
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   0.99 
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    24   7.0  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    24   7.0  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  115 bits (276), Expect = 3e-27
 Identities = 53/101 (52%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
 Frame = +2

Query: 86  MVNVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQGFRRYDRKQQGYGGQSKPIFXX 259
           MVN+PK R+TY              +QYKK  +   AQG RRYDRKQ G+GGQ+KP+F  
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 260 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 382
                  +VLRLEC  CK ++Q+ LKRCKHFELGG+KK KG
Sbjct: 61  KAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKG 101


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 380 PSSSCHHQAQSAYNASGPPVTSPCSLHIP 294
           P+SS  + A + YNAS PP   P S + P
Sbjct: 287 PTSSYGNGASTNYNASRPPSNHPHSSNYP 315


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 102 NSAEHTAKNANVTKFTKCLSTKSLRKGTPLRALD 203
           N A+H +K   + K T   S + L K   ++ALD
Sbjct: 78  NEAKHQSKEIMLPKETNVKSCEDLSKTGEIKALD 111


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 353 QSAYNASGPPVTSPCSLHIPDE 288
           QS  N+  PP++SP S   P E
Sbjct: 328 QSCTNSPSPPLSSPASSASPSE 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,507
Number of Sequences: 5004
Number of extensions: 19430
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)