Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N20
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...   116   8e-27
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...   116   8e-27
U43282-2|AAY86313.1|   73|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z11126-4|CAA77472.2|  180|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AC006680-5|AAK72301.2|  300|Caenorhabditis elegans Serpentine re...    27   4.5  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score =  116 bits (278), Expect = 8e-27
 Identities = 55/100 (55%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
 Frame = +2

Query: 86  MVNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGFRRYDRKQQGYGGQSKPIFXXX 262
           MVNVPK RRT+             +QYKK KE   AQG RRYDRKQ G+GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 263 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 382
                 IVLR+EC +CK + Q+ +KRCKHFELGG KK +G
Sbjct: 61  AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRG 100


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score =  116 bits (278), Expect = 8e-27
 Identities = 55/100 (55%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
 Frame = +2

Query: 86  MVNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGFRRYDRKQQGYGGQSKPIFXXX 262
           MVNVPK RRT+             +QYKK KE   AQG RRYDRKQ G+GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 263 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 382
                 IVLR+EC +CK + Q+ +KRCKHFELGG KK +G
Sbjct: 61  AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRG 100


>U43282-2|AAY86313.1|   73|Caenorhabditis elegans Hypothetical
           protein T22E5.7 protein.
          Length = 73

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 359 QAQSAYNASGPPVTSPCSLHIPDEVQFSL 273
           + ++ +  +G P+T PCS+ + +E  FSL
Sbjct: 19  EMKAYWGKAGAPITLPCSISLFNEESFSL 47


>Z11126-4|CAA77472.2|  180|Caenorhabditis elegans Hypothetical
           protein ZK643.6 protein.
          Length = 180

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 164 CTETLCELCDICIFCSMFCAVWVRSPFLRLF 72
           C +T C  C+IC   +  C +WV   F   F
Sbjct: 134 CPKT-CNACNICEDANKMCPIWVPRGFCSKF 163


>AC006680-5|AAK72301.2|  300|Caenorhabditis elegans Serpentine
           receptor, class x protein60 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 167 FCTETLCELCDICIFCSMFCAVWVRSPFLRLFSTATTN 54
           FC E L  L    I  + FCAVWV   + + FS   T+
Sbjct: 85  FCYE-LSVLTHFLISINRFCAVWVPLKYEKWFSRKNTS 121


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 287 LRLECADCKVRSQVALKRCKHFELGGDKK 373
           + +E A+CK R + + K+CK  E   ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,297,978
Number of Sequences: 27780
Number of extensions: 118632
Number of successful extensions: 338
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)