Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N19
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0450 - 17847676-17847841,17848024-17848131,17848223-178483... 33 0.083
08_02_1017 - 23616244-23616381,23616471-23616537,23617160-236172... 29 1.4
06_01_0438 + 3110703-3111945,3112486-3113057 28 2.4
05_03_0213 + 10303870-10303999,10304181-10304367,10305352-103054... 28 3.1
12_02_0289 - 16914975-16916238,16916246-16916484 27 4.1
08_01_0996 + 10089800-10090149,10090426-10090483,10092922-100931... 27 4.1
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 27 7.2
02_05_0942 + 32970537-32970581,32971059-32971113,32971300-329714... 27 7.2
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 27 7.2
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 26 9.5
02_05_0284 - 27496533-27496898 26 9.5
>11_04_0450 -
17847676-17847841,17848024-17848131,17848223-17848377,
17848471-17848560,17848650-17848748,17848862-17848928,
17849028-17849124,17849357-17849492,17849579-17849634,
17849718-17849801,17849909-17850125
Length = 424
Score = 33.1 bits (72), Expect = 0.083
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 216 LLDKLRPLEDRILPLAADMLLAGVEPVSFYKYLIEKYTSVII 341
L+D+L DR++ L+ D+ A V VS ++ +E+Y V++
Sbjct: 54 LVDRLSKFRDRVVALSEDIYCADVSDVSELQHALEEYLPVVL 95
>08_02_1017 -
23616244-23616381,23616471-23616537,23617160-23617238,
23617330-23617486,23617581-23617719,23617820-23617872,
23618037-23618120,23618291-23618359,23618488-23618553,
23618657-23618800,23619331-23619414,23619498-23619596,
23620097-23620219,23620745-23621290
Length = 615
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 183 LSSTELKPEQILLDKLRPLEDRILPLAADMLLAGVEPVS 299
L + L P L DK+ +RIL A+D++ A + P S
Sbjct: 149 LRNPALAPNSFLRDKIETTLERILAFASDVISAKIRPPS 187
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 63 FLVRNENTLKTNSDTFNSALKTYDRH-FSLTEHFLFKALDRLSSTELKPEQILLDKLRP 236
FLV+N +SDT S++K D H F L E+ + +L L P +L + P
Sbjct: 354 FLVQNSIIFSVSSDTTTSSIKVGDHHKFLLNENEITPSLFLLPWLVHDPADLLPQETPP 412
>05_03_0213 +
10303870-10303999,10304181-10304367,10305352-10305423,
10305722-10305793,10306059-10306130,10306435-10306518,
10306765-10306839,10307098-10307206
Length = 266
Score = 27.9 bits (59), Expect = 3.1
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = -2
Query: 229 NLSSNICSGFNSVELSLSRALKRKCSVKLKCLSYVFKALLKVSELVLRVFSLRTKKLPSA 50
N+S +CSGF S E+ +K C S+ L +++L L SL + +LP
Sbjct: 63 NISGELCSGFASTEIDWDYYPTINPFIKCDC-SFSNNTLCHITKLALASNSL-SGQLPKE 120
Query: 49 MSFEQRTSLSAGVDL 5
+ LS G++L
Sbjct: 121 LG-NLTNLLSLGINL 134
>12_02_0289 - 16914975-16916238,16916246-16916484
Length = 500
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 138 HFSLTEHFLFKALD-RLSSTELKPEQILLDKLRPLEDRILPL 260
+ ++TEH LF ++ LS T P + DKL P I PL
Sbjct: 398 YLNITEHSLFSEIEGLLSETNTTPADV-ADKLMPRNGEIGPL 438
>08_01_0996 +
10089800-10090149,10090426-10090483,10092922-10093126,
10093201-10093280,10093377-10093477,10093566-10093691,
10094099-10094101,10094736-10094763,10094875-10094961,
10095187-10095273,10095346-10095411,10095511-10095603,
10095688-10095744,10095834-10095959,10096049-10096139,
10096233-10096321,10096951-10097141,10097224-10097322,
10098814-10098829
Length = 650
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 327 CIFRSNIYRSSQVRLRPAACQQLTAVSDPLMVVTYQV 217
C+F S+ Y S + C VSDPL VV ++
Sbjct: 326 CVFLSSFYEISVFASKQFHCVMHKGVSDPLEVVAAEI 362
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 289 STPASSMSAANGSIRSSNGRNLSSNICSGFNSVEL 185
+T ASS+++ G RSS+G N+ N S S L
Sbjct: 329 ATRASSITSGTGKHRSSSGSNVDPNSASQTPSAAL 363
>02_05_0942 +
32970537-32970581,32971059-32971113,32971300-32971417,
32971567-32971615,32971637-32971723,32971890-32971970,
32972074-32972181,32972432-32972503,32973218-32973250
Length = 215
Score = 26.6 bits (56), Expect = 7.2
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +3
Query: 3 TRSTPAERLV-RCSKDIADGNFLVRNENTLKTNSDTFNSALKTYDRHFSLTEHFLFKALD 179
T+ TPA L CS++ + L RN+ + N +T K + SL + A D
Sbjct: 119 TKITPAFVLFFDCSEEEMERRLLGRNQGRVDDNIETIRKRFKVFVES-SLPVIEYYNAKD 177
Query: 180 RLSSTE-LKPEQILLDKLRPLEDRILPLAADMLLAGV 287
++ + KP + + ++ + P A + LL+GV
Sbjct: 178 KVKKIDAAKPIPEVFEDVKAI---FAPYAPNALLSGV 211
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 223 SSNICSGFNSVELSLSRALKRKCSVKLKC 137
+S++CSG + L R KRKC + +C
Sbjct: 343 TSSVCSGNGAGSDELWRQQKRKCQAQAEC 371
>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 132 DRHFSLTEHFLFKALDRLSSTELKP 206
+ HF +TEH+ F L LS L P
Sbjct: 1163 EAHFDVTEHYWFPMLAGLSDLTLDP 1187
>02_05_0284 - 27496533-27496898
Length = 121
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 289 STPASSMSAANGSIRSSNGRNLSSNICSG 203
S P+S ++AANG +R RN + + C G
Sbjct: 25 SAPSSLLAAANGLLRDWLARNPAVSACWG 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,007,936
Number of Sequences: 37544
Number of extensions: 154031
Number of successful extensions: 423
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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