Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N19
(398 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC093980-1|AAH93980.1| 404|Homo sapiens sorting nexin 5 protein. 29 7.5
BC093623-1|AAH93623.1| 404|Homo sapiens sorting nexin 5 protein. 29 7.5
BC062638-1|AAH62638.1| 412|Homo sapiens SNX5 protein protein. 29 7.5
AL121585-3|CAI14858.1| 269|Homo sapiens sorting nexin 5 protein. 29 7.5
AL121585-2|CAC00471.1| 404|Homo sapiens sorting nexin 5 protein. 29 7.5
AK223308-1|BAD97028.1| 404|Homo sapiens sorting nexin 5 variant... 29 7.5
AK001793-1|BAA91914.1| 404|Homo sapiens protein ( Homo sapiens ... 29 7.5
AF121855-1|AAD27828.1| 404|Homo sapiens sorting nexin 5 protein. 29 7.5
>BC093980-1|AAH93980.1| 404|Homo sapiens sorting nexin 5 protein.
Length = 404
Score = 28.7 bits (61), Expect = 7.5
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +3
Query: 78 ENTLKTNSDTFNSALKTYDRHFSLTEHFLFKALDRLSSTELKPEQILLDKLRPLEDRILP 257
++ +K+ + + +K D F ++FL +R+ + +K +++ +D I
Sbjct: 188 KSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHT 247
Query: 258 LAADMLLAGVEPVSFYKYLIE 320
A LA EP KYL++
Sbjct: 248 AACLHSLALEEPTVIKKYLLK 268
>BC093623-1|AAH93623.1| 404|Homo sapiens sorting nexin 5 protein.
Length = 404
Score = 28.7 bits (61), Expect = 7.5
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +3
Query: 78 ENTLKTNSDTFNSALKTYDRHFSLTEHFLFKALDRLSSTELKPEQILLDKLRPLEDRILP 257
++ +K+ + + +K D F ++FL +R+ + +K +++ +D I
Sbjct: 188 KSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHT 247
Query: 258 LAADMLLAGVEPVSFYKYLIE 320
A LA EP KYL++
Sbjct: 248 AACLHSLALEEPTVIKKYLLK 268
>BC062638-1|AAH62638.1| 412|Homo sapiens SNX5 protein protein.
Length = 412
Score = 28.7 bits (61), Expect = 7.5
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +3
Query: 78 ENTLKTNSDTFNSALKTYDRHFSLTEHFLFKALDRLSSTELKPEQILLDKLRPLEDRILP 257
++ +K+ + + +K D F ++FL +R+ + +K +++ +D I
Sbjct: 196 KSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHT 255
Query: 258 LAADMLLAGVEPVSFYKYLIE 320
A LA EP KYL++
Sbjct: 256 AACLHSLALEEPTVIKKYLLK 276
>AL121585-3|CAI14858.1| 269|Homo sapiens sorting nexin 5 protein.
Length = 269
Score = 28.7 bits (61), Expect = 7.5
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +3
Query: 78 ENTLKTNSDTFNSALKTYDRHFSLTEHFLFKALDRLSSTELKPEQILLDKLRPLEDRILP 257
++ +K+ + + +K D F ++FL +R+ + +K +++ +D I
Sbjct: 151 KSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHT 210
Query: 258 LAADMLLAGVEPVSFYKYLIE 320
A LA EP KYL++
Sbjct: 211 AACLHSLALEEPTVIKKYLLK 231
>AL121585-2|CAC00471.1| 404|Homo sapiens sorting nexin 5 protein.
Length = 404
Score = 28.7 bits (61), Expect = 7.5
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +3
Query: 78 ENTLKTNSDTFNSALKTYDRHFSLTEHFLFKALDRLSSTELKPEQILLDKLRPLEDRILP 257
++ +K+ + + +K D F ++FL +R+ + +K +++ +D I
Sbjct: 188 KSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHT 247
Query: 258 LAADMLLAGVEPVSFYKYLIE 320
A LA EP KYL++
Sbjct: 248 AACLHSLALEEPTVIKKYLLK 268
>AK223308-1|BAD97028.1| 404|Homo sapiens sorting nexin 5 variant
protein.
Length = 404
Score = 28.7 bits (61), Expect = 7.5
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +3
Query: 78 ENTLKTNSDTFNSALKTYDRHFSLTEHFLFKALDRLSSTELKPEQILLDKLRPLEDRILP 257
++ +K+ + + +K D F ++FL +R+ + +K +++ +D I
Sbjct: 188 KSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHT 247
Query: 258 LAADMLLAGVEPVSFYKYLIE 320
A LA EP KYL++
Sbjct: 248 AACLHSLALEEPTVIKKYLLK 268
>AK001793-1|BAA91914.1| 404|Homo sapiens protein ( Homo sapiens
cDNA FLJ10931 fis, clone OVARC1000564. ).
Length = 404
Score = 28.7 bits (61), Expect = 7.5
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +3
Query: 78 ENTLKTNSDTFNSALKTYDRHFSLTEHFLFKALDRLSSTELKPEQILLDKLRPLEDRILP 257
++ +K+ + + +K D F ++FL +R+ + +K +++ +D I
Sbjct: 188 KSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHT 247
Query: 258 LAADMLLAGVEPVSFYKYLIE 320
A LA EP KYL++
Sbjct: 248 AACLHSLALEEPTVIKKYLLK 268
>AF121855-1|AAD27828.1| 404|Homo sapiens sorting nexin 5 protein.
Length = 404
Score = 28.7 bits (61), Expect = 7.5
Identities = 18/81 (22%), Positives = 37/81 (45%)
Frame = +3
Query: 78 ENTLKTNSDTFNSALKTYDRHFSLTEHFLFKALDRLSSTELKPEQILLDKLRPLEDRILP 257
++ +K+ + + +K D F ++FL +R+ + +K +++ +D I
Sbjct: 188 KSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHT 247
Query: 258 LAADMLLAGVEPVSFYKYLIE 320
A LA EP KYL++
Sbjct: 248 AACLHSLALEEPTVIKKYLLK 268
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,262,208
Number of Sequences: 237096
Number of extensions: 802242
Number of successful extensions: 1954
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1954
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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