Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N18
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    44   4e-06
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   0.43 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   0.43 
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   0.76 
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   1.0  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   1.8  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   1.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   2.3  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    25   2.3  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   3.1  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    24   5.3  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    23   7.1  
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    23   7.1  
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    23   9.3  
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family...    23   9.3  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 44.4 bits (100), Expect = 4e-06
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 146 CYKCNRTGHFAREC-TQGGVGARDAGFNRQREKCFEWNRTGQLARDC 283
           CYKC R GH AR+C T G       G +R    C+     G  ARDC
Sbjct: 85  CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131



 Score = 43.6 bits (98), Expect = 6e-06
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 15/64 (23%)
 Frame = +2

Query: 140 SVCYKCNRTGHFARECTQ----------GGVG--ARDAGFN---RQREKCFEWNRTGQLA 274
           S+CY CN+TGH A ECT+          G  G   RD   +   RQ  +C++  R G +A
Sbjct: 36  SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95

Query: 275 RDCK 286
           RDC+
Sbjct: 96  RDCR 99



 Score = 31.1 bits (67), Expect = 0.035
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
 Frame = +2

Query: 134 SSSVCYKCNRTGHFARECTQ-------GGVGARDAGFNR--QREKCFEWNRTGQLARDC 283
           S+  CY C   GH AR+CT        G +G R     +    + C++ N+ G +A +C
Sbjct: 114 SNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172



 Score = 30.7 bits (66), Expect = 0.047
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 143 VCYKCNRTGHFARECT 190
           +CYKCN+ GH A  CT
Sbjct: 158 LCYKCNQPGHIAVNCT 173


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 140  SVCYKCNRTGHFAREC 187
            S CYKC +  H  REC
Sbjct: 1804 STCYKCGKADHNLREC 1819


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 140  SVCYKCNRTGHFAREC 187
            S CYKC +  H  REC
Sbjct: 1804 STCYKCGKADHNLREC 1819


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 0.76
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
 Frame = +2

Query: 137 SSVCYKCNRTGHFAREC------TQGGVGARDAGFNRQREKCFEWNRTGQLARDCKE 289
           S VC+ C   GH +++C      T G +    +      +KC      G +A  C E
Sbjct: 86  SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSE 142



 Score = 23.0 bits (47), Expect = 9.3
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +2

Query: 146 CYKCNRTGHFARECT 190
           CY C    HF  +CT
Sbjct: 189 CYNCASDEHFGDDCT 203


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 161 CCTCSIRLNSFSIRCITC 108
           C TC  R+N  SIRC++C
Sbjct: 38  CSTCK-RINKRSIRCLSC 54


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 143 VCYKCNRTGHFAREC 187
           +CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 287 PCSRAPTARCGSTRSTSP 234
           PCS AP++   STRS SP
Sbjct: 394 PCSTAPSSPTFSTRSFSP 411


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 293 PPPCSRAPTARCGSTRST-SPAAG*TQRRGRLRHLACTRGRSAPSCCTCSIRLNSFSIR 120
           PPP S+AP A   S  S+ +P AG              RG S PS     +  +S+ ++
Sbjct: 203 PPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASVPPVPPSSYVLQ 261


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +2

Query: 125 SKMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKE 289
           +K + S+C++C    H    C++ G          +  KCF  +  G L+  C++
Sbjct: 95  AKDNVSICFRCGSKEHSLNACSKKG--------PLKFAKCFICHENGHLSGQCEQ 141



 Score = 24.6 bits (51), Expect = 3.1
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +2

Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKE 289
           C+ C+  GH + +C Q   G    G       C   +    LA+DC +
Sbjct: 126 CFICHENGHLSGQCEQNPKGLYPKG-----GCCKFCSSVHHLAKDCDQ 168



 Score = 23.0 bits (47), Expect = 9.3
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = +2

Query: 146 CYKCNRTGHFARECTQ 193
           C+ C + GH  ++C +
Sbjct: 79  CFACRQQGHIVQDCPE 94


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 143 VCYKCNRTGHFAREC 187
           VC  C   GH AR+C
Sbjct: 335 VCRHCGSIGHIARDC 349


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 206 RLRHLACTRGRSAPSCCTCSI 144
           RL+ + C+RG+  P C TC++
Sbjct: 11  RLKKIKCSRGQ--PRCQTCTL 29


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 264 PVRFHSKHFSRCRLNPASRAPT 199
           PV +HS     CR+ P   APT
Sbjct: 397 PVYYHSLLIECCRIAPKILAPT 418


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 182 ECTQGGVGARDAGFNRQREKCFEW 253
           E T GG G  +A  N+ +EK  +W
Sbjct: 167 ELTAGGGGKTEARMNKIKEKNRKW 190


>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 112 LVEHLDHYCTDRSTIKYLVK 53
           ++EHL +   D STIK L K
Sbjct: 124 IIEHLHYRIIDVSTIKELAK 143


>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 227 RQREKCFEWNRTGQLA 274
           ++ +KCFE N  GQLA
Sbjct: 128 QELQKCFETNVIGQLA 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 987,015
Number of Sequences: 5004
Number of extensions: 15937
Number of successful extensions: 59
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)