Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N18
(293 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 49 5e-07
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 36 0.007
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 33 0.047
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 33 0.047
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 32 0.062
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.082
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 31 0.11
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 31 0.11
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 31 0.11
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 0.58
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 0.58
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 0.58
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 28 1.3
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 1.3
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 1.3
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 1.3
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 28 1.3
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 28 1.3
AF016687-11|ABL01528.1| 646|Caenorhabditis elegans Hypothetical... 28 1.3
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 28 1.3
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 27 2.3
Z81546-10|CAH10812.1| 674|Caenorhabditis elegans Hypothetical p... 27 3.1
Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical pr... 27 3.1
AY313179-1|AAP79304.1| 782|Caenorhabditis elegans myotubularin-... 27 3.1
AY313177-1|AAP79302.1| 676|Caenorhabditis elegans myotubularin-... 27 3.1
Z93782-1|CAB07853.1| 164|Caenorhabditis elegans Hypothetical pr... 26 5.4
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 26 5.4
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 25 7.1
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 25 7.1
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 49.2 bits (112), Expect = 5e-07
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +2
Query: 140 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDC 283
S CY C TGHF+R+C +GG G G C+ G +RDC
Sbjct: 35 STCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDC 82
Score = 46.4 bits (105), Expect = 4e-06
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKEE 292
CY C R+GH +RECT+ G + + ++C++ TG ++RDC +
Sbjct: 109 CYNCGRSGHISRECTESG--------SAEEKRCYQCQETGHISRDCPSQ 149
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 131 MSSSVCYKCNRTGHFARECTQG-GVGARDAGFNRQREKCFEWNRTGQLARDC 283
MS CYKC + GH +R C G G R G C+ TG +RDC
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNGESDGGRRGGGG--GSTCYNCQETGHFSRDC 50
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQ-------GGVGARDA-GFNRQREKCFEWNRTGQLARDCKE 289
CY C GH++R+C GG G R G + +KC+ R+G ++R+C E
Sbjct: 69 CYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRECTE 124
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +2
Query: 125 SKMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKE 289
S S VC+KC H EC + GV GF CF + G ++RDC +
Sbjct: 249 SSSSDGVCFKCGSMEHSIHECKKKGV----KGF--PYATCFVCKQVGHISRDCHQ 297
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 140 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKE 289
+ C+ C + GH +R+C Q G G C L RDC E
Sbjct: 280 ATCFVCKQVGHISRDCHQNVNGVYPDG-----GCCNVCGANTHLRRDCPE 324
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = +2
Query: 128 KMSSSVCYKCNRTGHFARECTQGGVGARD 214
K++ S C+ C GH +C + + D
Sbjct: 225 KITGSACFHCREPGHRLADCPKRNSSSSD 253
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 32.7 bits (71), Expect = 0.047
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 137 SSVCYKCNRTGHFARECTQGGVGARDAGF-NRQREKCFEWNRTG 265
S+ C+ C + GH A EC+ + G N + +C W++ G
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNG 244
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 32.7 bits (71), Expect = 0.047
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 137 SSVCYKCNRTGHFARECTQGGVGARDAGF-NRQREKCFEWNRTG 265
S+ C+ C + GH A EC+ + G N + +C W++ G
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNG 244
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 32.3 bits (70), Expect = 0.062
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 131 MSSSVCYKCNRTGHFARECTQG-GVGARDAG 220
MS CYKC + GH +R C G G R G
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNGESDGGRRGG 31
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 31.9 bits (69), Expect = 0.082
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 131 MSSSVCYKCNRTGHFARECTQGGV 202
+S CYKC GH+A C +G +
Sbjct: 247 LSDVTCYKCGEKGHYANRCHKGAL 270
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.5 bits (68), Expect = 0.11
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 143 VCYKCNRTGHFARECTQ 193
VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKEE 292
C+ C + GH + +C + R+ C+ + G +R+C EE
Sbjct: 160 CFNCQQPGHRSSDCP-------EPRKEREPRVCYNCQQPGHTSRECTEE 201
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.5 bits (68), Expect = 0.11
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 143 VCYKCNRTGHFARECTQ 193
VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKEE 292
C+ C + GH + +C + R+ C+ + G +R+C EE
Sbjct: 160 CFNCQQPGHRSSDCP-------EPRKEREPRVCYNCQQPGHTSRECTEE 201
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 31.5 bits (68), Expect = 0.11
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 143 VCYKCNRTGHFARECTQ 193
VCY C + GH +RECT+
Sbjct: 184 VCYNCQQPGHTSRECTE 200
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKEE 292
C+ C + GH + +C + R+ C+ + G +R+C EE
Sbjct: 160 CFNCQQPGHRSSDCP-------EPRKEREPRVCYNCQQPGHTSRECTEE 201
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKEE 292
C+ C + GH + +C + R+ C+ + G +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKEE 292
C+ C + GH + +C + R+ C+ + G +RDC EE
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 414
Score = 27.5 bits (58), Expect = 1.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 143 VCYKCNRTGHFARECTQ 193
VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299
Score = 27.5 bits (58), Expect = 1.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 143 VCYKCNRTGHFARECTQ 193
VCY C + GH +R+C +
Sbjct: 397 VCYNCQQPGHNSRDCPE 413
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKEE 292
C+ C + GH + +C + R+ C+ + G +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKEE 292
C+ C + GH + +C + R+ C+ + G +RDC EE
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 414
Score = 27.5 bits (58), Expect = 1.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 143 VCYKCNRTGHFARECTQ 193
VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299
Score = 27.5 bits (58), Expect = 1.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 143 VCYKCNRTGHFARECTQ 193
VCY C + GH +R+C +
Sbjct: 397 VCYNCQQPGHNSRDCPE 413
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKEE 292
C+ C + GH + +C + R+ C+ + G +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKEE 292
C+ C + GH + +C + R+ C+ + G +RDC EE
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 414
Score = 27.5 bits (58), Expect = 1.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 143 VCYKCNRTGHFARECTQ 193
VCY C + GH +R+C +
Sbjct: 283 VCYNCQQPGHNSRDCPE 299
Score = 27.5 bits (58), Expect = 1.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 143 VCYKCNRTGHFARECTQ 193
VCY C + GH +R+C +
Sbjct: 397 VCYNCQQPGHNSRDCPE 413
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 27.9 bits (59), Expect = 1.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQ 193
C++C+R GHF C Q
Sbjct: 1357 CHQCHRIGHFVESCPQ 1372
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.9 bits (59), Expect = 1.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 128 KMSSSVCYKCNRTGHFAREC 187
K+ + C++CN GH A C
Sbjct: 671 KLKNRACFRCNEMGHIAWNC 690
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.9 bits (59), Expect = 1.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 128 KMSSSVCYKCNRTGHFAREC 187
K+ + C++CN GH A C
Sbjct: 574 KLKNRACFRCNEMGHIAWNC 593
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.9 bits (59), Expect = 1.3
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 128 KMSSSVCYKCNRTGHFAREC 187
K+ + C++CN GH A C
Sbjct: 585 KLKNRACFRCNEMGHIAWNC 604
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKEE 292
C C GHFA +C Q V R C + G A+DC+ E
Sbjct: 618 CRNCGIEGHFAVDCDQPKV---------PRGPCRNCGQEGHFAKDCQNE 657
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 128 KMSSSVCYKCNRTGHFAREC 187
K+ C C + GHFA++C
Sbjct: 635 KVPRGPCRNCGQEGHFAKDC 654
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/48 (27%), Positives = 19/48 (39%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKE 289
C+ C GH ++EC + V R C + G A DC +
Sbjct: 572 CHNCGEEGHISKECDKPKV---------PRFPCRNCEQLGHFASDCDQ 610
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKEE 292
C C GHFA +C Q V R C + G A+DC+ E
Sbjct: 618 CRNCGIEGHFAVDCDQPKV---------PRGPCRNCGQEGHFAKDCQNE 657
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 128 KMSSSVCYKCNRTGHFAREC 187
K+ C C + GHFA++C
Sbjct: 635 KVPRGPCRNCGQEGHFAKDC 654
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/48 (27%), Positives = 19/48 (39%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFEWNRTGQLARDCKE 289
C+ C GH ++EC + V R C + G A DC +
Sbjct: 572 CHNCGEEGHISKECDKPKV---------PRFPCRNCEQLGHFASDCDQ 610
>AF016687-11|ABL01528.1| 646|Caenorhabditis elegans Hypothetical
protein T21D12.7 protein.
Length = 646
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 263 RCGSTRSTSPAAG*TQRRGRLRHLACTRGRSAPS 162
RC S+R + P Q+ L H+ CT+ + P+
Sbjct: 351 RCSSSRDSCPEQYMCQQAKNLEHICCTKPLNCPA 384
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 27.9 bits (59), Expect = 1.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGA 208
CYKC GH +++C Q +
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNS 333
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +2
Query: 146 CYKCNRTGHFARECTQGGVGARDAGFNRQ 232
C+ C GH AR C + + G+ Q
Sbjct: 576 CHYCKNVGHMARNCKKKAFAEKRKGYEDQ 604
>Z81546-10|CAH10812.1| 674|Caenorhabditis elegans Hypothetical
protein F53A2.8c protein.
Length = 674
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 212 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 114
RGRL L ++ + C C+ L FS RC+
Sbjct: 182 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 214
>Z81546-9|CAD45596.2| 782|Caenorhabditis elegans Hypothetical
protein F53A2.8b protein.
Length = 782
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 212 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 114
RGRL L ++ + C C+ L FS RC+
Sbjct: 290 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 322
>Z81546-8|CAB04456.1| 676|Caenorhabditis elegans Hypothetical
protein F53A2.8a protein.
Length = 676
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 212 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 114
RGRL L ++ + C C+ L FS RC+
Sbjct: 184 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 216
>AY313179-1|AAP79304.1| 782|Caenorhabditis elegans
myotubularin-related protein MTM-6B protein.
Length = 782
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 212 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 114
RGRL L ++ + C C+ L FS RC+
Sbjct: 290 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 322
>AY313177-1|AAP79302.1| 676|Caenorhabditis elegans
myotubularin-related protein MTM-6A protein.
Length = 676
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 212 RGRLRHLACTRGRSAPSCCTCSIRLNSFSIRCI 114
RGRL L ++ + C C+ L FS RC+
Sbjct: 184 RGRLPVLTYFHQQTEAALCRCAQPLTGFSARCV 216
>Z93782-1|CAB07853.1| 164|Caenorhabditis elegans Hypothetical
protein R12G8.1 protein.
Length = 164
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 258 RFHSKHFSRCRLNPASRAPTP 196
R H+ +RC P+SRAP P
Sbjct: 67 RCHALITARCTFGPSSRAPVP 87
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 146 CYKCNRTGHFAREC 187
CY C + GH A EC
Sbjct: 411 CYYCGKRGHTANEC 424
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 191 ACTRGRSAPSCCTCSIRLNSFSIRC 117
ACT GR+ C ++ + ++RC
Sbjct: 326 ACTNGRAIVMFCPAGLKFSESTVRC 350
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -1
Query: 191 ACTRGRSAPSCCTCSIRLNSFSIRC 117
ACT GR+ C ++ + ++RC
Sbjct: 326 ACTNGRAIVMFCPAGLKFSESTVRC 350
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,798,119
Number of Sequences: 27780
Number of extensions: 101995
Number of successful extensions: 427
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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