Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N18
         (293 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   1.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   1.4  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   1.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   3.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   5.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   7.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    19   9.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   9.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 264 PVRFHSKHFSRCRLNPASRA 205
           P RFHS+  S+  L+P+S A
Sbjct: 406 PKRFHSRAASKEDLSPSSLA 425


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 264 PVRFHSKHFSRCRLNPASRA 205
           P RFHS+  S+  L+P+S A
Sbjct: 406 PKRFHSRAASKEDLSPSSLA 425


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 293 PPPCSRAPTARCGSTRSTSPAA 228
           P P   +P    GS+ STSPAA
Sbjct: 62  PSPTGSSPQ-HSGSSASTSPAA 82


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -1

Query: 188 CTRGRSAPSCCTCSIRLNS 132
           C   R + SCC C   +N+
Sbjct: 346 CRSRRHSDSCCLCLDSMNA 364


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = +3

Query: 9  LSCKRSVINYILFV-NF 56
          +SC   +I Y+LF+ NF
Sbjct: 1  MSCGMGMIKYLLFIFNF 17


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 30  INYILFVNFTKY 65
           +NY  FVN T Y
Sbjct: 132 LNYSAFVNLTAY 143


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 281 SRAPTARCGSTRS 243
           S APT+ C S RS
Sbjct: 598 SSAPTSVCSSPRS 610


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 155 CNRTGHFAR 181
           C R+ HFAR
Sbjct: 11  CTRSAHFAR 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,682
Number of Sequences: 438
Number of extensions: 1101
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)