Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N16
         (203 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    88   2e-19
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz...    43   5e-06
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    38   2e-04
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    35   0.001
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    34   0.003
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    32   0.009
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2...    30   0.048
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac...    30   0.048
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac...    29   0.064
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   1.4  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    24   2.4  
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    23   4.2  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   5.5  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    23   5.5  
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      23   5.5  
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    23   7.3  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    23   7.3  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    23   7.3  

>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 87.8 bits (208), Expect = 2e-19
 Identities = 37/44 (84%), Positives = 40/44 (90%)
 Frame = +3

Query: 72  MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSP 203
           MALKRINREL DLG+DPP+ CSAGP G+DLFHWQATIMGP DSP
Sbjct: 1   MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSP 44


>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
           E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 43.2 bits (97), Expect = 5e-06
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +3

Query: 75  ALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSP 203
           A +R+ R+ + + +DPPA  SA P  +++  W A I+GP D+P
Sbjct: 5   ARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTP 47


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 37.9 bits (84), Expect = 2e-04
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 72  MALKRINRELQDLGRDPPAQCSAGPHGE-DLFHWQATIMGPVDSP 203
           MAL+R+ +E ++L  + P   +AGP  E D F W   I GP  +P
Sbjct: 5   MALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTP 49


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 35.1 bits (77), Expect = 0.001
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +3

Query: 72  MAL-KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDS 200
           MAL KRI +E++ L RDPP    A P  ++L +++ T+ GP  S
Sbjct: 1   MALPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQS 44


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 33.9 bits (74), Expect = 0.003
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 81  KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDS 200
           +R+ +E  DL   P          ++LFHW  T +GP DS
Sbjct: 10  RRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDS 49


>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 32.3 bits (70), Expect = 0.009
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 75  ALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSP 203
           A KR+ +E   L ++P     A P  E++  W   I GP D+P
Sbjct: 6   AYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTP 48


>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 176

 Score = 29.9 bits (64), Expect = 0.048
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 81  KRINRELQDLGRDPPAQCSAGPHGE-DLFHWQATIMGPVDS 200
           KR+  EL  L        SA P  + +L HW  TI GP D+
Sbjct: 31  KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDT 71


>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
           Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 167

 Score = 29.9 bits (64), Expect = 0.048
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 87  INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDS 200
           + ++L+++ ++PP   S G    + +F W+  I+GP D+
Sbjct: 10  LRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDT 48


>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
           Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 29.5 bits (63), Expect = 0.064
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 156 DLFHWQATIMGPVDSP 203
           D+FHW+A I GP ++P
Sbjct: 33  DMFHWKAVIEGPTETP 48


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 164 KQIFAVWSCGTLCWWI 117
           K +F  +  G LCWWI
Sbjct: 280 KSVFQGYLMGGLCWWI 295


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 130 NVPQDHTAKICFIG 171
           N+P D TA  CFIG
Sbjct: 154 NIPIDETALYCFIG 167


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +3

Query: 63  NNQMALKRINRELQDLGRDPPAQCSAG---PHGEDLFHWQATIMGPV 194
           ++  A K I+ + Q+   +  A   AG   P G   + W AT M P+
Sbjct: 246 SSSAAAKNISEDAQNRMTNATASIMAGSALPSGGKKYSWMATDMTPM 292


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +1

Query: 94  GNYKIWEEIHQHNVPQDHTAKICFIGKPQLWVQL 195
           G+   +  IH   VP  HT     I K   W  L
Sbjct: 472 GSQGDFNAIHSRKVPVTHTFTYILISKTNRWNSL 505


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = +1

Query: 103 KIWEEIHQHNVPQDHTAKICFIGKPQLW 186
           K WE++   NVP       C++     W
Sbjct: 295 KEWEKLKSFNVPLSERIVECYLDDENRW 322


>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 55  HNKIIKW-R*NELIGNYKIWEEIHQHNVPQDH 147
           ++ ++ W + NE+IG YK  E    +N  Q H
Sbjct: 26  NHAVVSWNQTNEVIGLYKANEHKFMNNRKQSH 57


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = +3

Query: 126 AQCSAGPHGED---LFHWQATIMGPVDS 200
           + CS G    D   L  W ATI+GP  S
Sbjct: 24  SSCSYGLTNADDITLSDWNATILGPAHS 51


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 147 HGEDLFHWQA 176
           H ED FHW+A
Sbjct: 208 HCEDCFHWEA 217


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -1

Query: 167 MKQIFAVWSC-GTLCWWISSQI 105
           + +I  +W   G  CWWI+  I
Sbjct: 219 LSKILKLWGQPGNKCWWINEVI 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 838,750
Number of Sequences: 5004
Number of extensions: 13105
Number of successful extensions: 36
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)