Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N16
(203 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 89 5e-19
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 89 5e-19
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 81 1e-16
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 40 3e-04
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 40 3e-04
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 33 0.021
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 30 0.26
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 28 0.79
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 28 1.0
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 27 1.8
U42846-1|AAA83600.2| 872|Caenorhabditis elegans Hypothetical pr... 25 5.6
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 25 7.4
AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase... 25 9.7
AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase... 25 9.7
AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying de... 25 9.7
AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying de... 25 9.7
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 88.6 bits (210), Expect = 5e-19
Identities = 38/44 (86%), Positives = 41/44 (93%)
Frame = +3
Query: 72 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSP 203
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SP
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESP 44
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 88.6 bits (210), Expect = 5e-19
Identities = 38/44 (86%), Positives = 41/44 (93%)
Frame = +3
Query: 72 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSP 203
MALKRI +ELQDLGRDPPAQCSAGP G+DLFHWQATIMGP +SP
Sbjct: 1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESP 44
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 80.6 bits (190), Expect = 1e-16
Identities = 34/44 (77%), Positives = 38/44 (86%)
Frame = +3
Query: 72 MALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSP 203
MALKRI +EL DLGRDPPAQCS G G+DL+HWQATIMGP +SP
Sbjct: 1 MALKRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPESP 44
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 39.5 bits (88), Expect = 3e-04
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 81 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSP 203
+R+ R+ + L DPPA S P +++ W+A I GP ++P
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETP 47
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 39.5 bits (88), Expect = 3e-04
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 81 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSP 203
+R+ R+ + L DPPA S P +++ W+A I GP ++P
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETP 47
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 33.5 bits (73), Expect = 0.021
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 75 ALKRINRELQDLGRDPPAQCSAGPHGED-LFHWQATIMGPVDS 200
ALKR+ E ++L PP A P ED F W+ I GP ++
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEET 47
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 29.9 bits (64), Expect = 0.26
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 81 KRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSP 203
+RI +E Q L DP SA P + ++ I GP DSP
Sbjct: 7 RRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSP 47
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 28.3 bits (60), Expect = 0.79
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 75 ALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGPVDSP 203
A++R+ ++ L +DP A P+ +++ W + G D+P
Sbjct: 20 AVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTP 62
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 87 INRELQDLGRDPPAQCSAG-PHGEDLFHWQATIMGPVDS 200
+ ++L D+ R P SAG D++ W+ ++GP D+
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDT 46
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 78 LKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMG 188
++R+ +E +L R P A P ++LF W TI G
Sbjct: 12 VRRLMKEAMEL-RQPTEMYHAQPMEDNLFEWHFTIRG 47
>U42846-1|AAA83600.2| 872|Caenorhabditis elegans Hypothetical
protein T19D2.1 protein.
Length = 872
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 154 SPCGPAEHCAGGSL-PRSCNSLLIRFN 77
+PCGP ++C G P C S + ++
Sbjct: 568 APCGPGQYCIKGECRPLLCGSTTLAYS 594
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 75 ALKRINRELQDLGRDPPAQCSAGPHGEDLFHWQATIMGP 191
AL+ + EL++L P + + ++LF W I GP
Sbjct: 11 ALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGP 49
>AF188477-1|AAF01458.1| 1418|Caenorhabditis elegans phospholipase C
beta protein.
Length = 1418
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 196 STGPIIVACQ*NKSSPCGPAEHCAGGSLPRSCN 98
ST I + +S GP++H GG +P N
Sbjct: 672 STSSITITTTGCSTSSSGPSKHILGGEMPAKEN 704
>AF179426-1|AAF05701.1| 1431|Caenorhabditis elegans phospholipase C
beta homolog EGL-8 protein.
Length = 1431
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 196 STGPIIVACQ*NKSSPCGPAEHCAGGSLPRSCN 98
ST I + +S GP++H GG +P N
Sbjct: 673 STSSITITTTGCSTSSSGPSKHILGGEMPAKEN 705
>AF068714-6|AAL77167.1| 1419|Caenorhabditis elegans Egg laying
defective protein 8,isoform a protein.
Length = 1419
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 196 STGPIIVACQ*NKSSPCGPAEHCAGGSLPRSCN 98
ST I + +S GP++H GG +P N
Sbjct: 673 STSSITITTTGCSTSSSGPSKHILGGEMPAKEN 705
>AF068714-5|AAL77168.1| 1431|Caenorhabditis elegans Egg laying
defective protein 8,isoform b protein.
Length = 1431
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 196 STGPIIVACQ*NKSSPCGPAEHCAGGSLPRSCN 98
ST I + +S GP++H GG +P N
Sbjct: 673 STSSITITTTGCSTSSSGPSKHILGGEMPAKEN 705
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,753,236
Number of Sequences: 27780
Number of extensions: 79698
Number of successful extensions: 185
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,740,198
effective HSP length: 47
effective length of database: 11,434,538
effective search space used: 228690760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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