Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N15
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar...    46   8e-07
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   0.66 
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   1.5  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    24   3.5  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    23   4.7  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    23   6.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    23   6.2  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   6.2  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    23   8.2  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    23   8.2  
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   8.2  

>SPAC15E1.06 |vps29||retromer complex subunit
           Vps29|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 46.0 bits (104), Expect = 8e-07
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +2

Query: 161 MLVLVLGDLHIPHRCSSLAPKFKKLLLPGRI 253
           MLVLV+GD HIP R   L+ KF++LL+PG+I
Sbjct: 1   MLVLVIGDFHIPDRAPKLSEKFRQLLIPGKI 31


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 39  LCIYNYDKIYKCDKLR*E*YYSLRAKNWLIINSYY-LYCIPKCWSSYLAIY 188
           L I +   +Y  D L  + Y S +   W + + +  +Y IPK WS    IY
Sbjct: 361 LVISSNSILYPKDSLD-QIYDSTKTLTWALASQWIGVYLIPKAWSDLWLIY 410


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 12  CCGLKIYFYLCIYNYDKIYKCDKLR*E*YYSLRAKNWLIINSYYLYCIPKCWSS-YLAIY 188
           CC +   FY+  Y +D  Y    L+   Y S+ A  ++     Y Y    C +  +L I 
Sbjct: 371 CCAMSFLFYITFYCWDNYY-YSFLQVVHYTSITAAGYI----SYTYSFTSCATGFFLGIL 425

Query: 189 ISL 197
           I L
Sbjct: 426 IRL 428



 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 24  KIYFYLCIYNYDKIYKCDKLR*E*YYSLRA 113
           +I FY+C ++   ++     + E YYSL A
Sbjct: 90  RISFYICYFSIFLLFFAISFQAECYYSLTA 119


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 114 LHAKNNITPTGVYRIYRFYRNCKY 43
           +HA+  +T  G+Y++   Y+ C +
Sbjct: 87  IHARYILTAQGLYKMLEKYKKCDF 110


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 252 ILPGSSSFLNFGARLLHL*GICRSPSTRTNILECNIN 142
           I+P    FL FGAR+L    I   P +   ++E NI+
Sbjct: 398 IVPARQMFLAFGARILMKGTI--DPESHKALIEKNIS 432


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 632

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 36 YLCIYNYDKIYKCDKLR 86
          YLC+Y   +  KCDK R
Sbjct: 24 YLCLYCRRRKIKCDKNR 40


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 209 YCIYEGYVDRQVRGPTFWNAI*II 138
           Y  Y+  V R  R PTFW +I ++
Sbjct: 604 YEAYQQAVYRDGRNPTFWCSIGVL 627


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 75  DKLR*E*YYSLRAKNWLIINSYY-LYCIPKCW 167
           +K+  E    +RA   L    Y  LYCIP+ W
Sbjct: 36  EKISQEEMQIIRATQKLARTKYMTLYCIPRAW 67


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 96  YYSLRAKNWLIINSYYLYCIPK--CWSSYLAIYISLIDAVV*LQSLRSYYCQAG 251
           Y SL+  + +I+NS+Y Y + K   W S     I+ +     +Q  R    +AG
Sbjct: 801 YDSLQLAHKVILNSFYGYVMRKGSRWYSIEMAGITCLTGATIIQMARQIVERAG 854


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 102 SLRAKNWLIINSYYLYCIPKCWSS 173
           SL+A   L+ +S   +  P CW S
Sbjct: 376 SLKASGHLVKHSQIFHSYPFCWRS 399


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 57  DKIYKCDKL---R*E*YYSLRAKNWLIINSYY 143
           D+I+KC ++     +  Y   +KNW I++ +Y
Sbjct: 207 DEIHKCIQMVLSDLDSIYKRESKNWHIVSQFY 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,034,714
Number of Sequences: 5004
Number of extensions: 19124
Number of successful extensions: 51
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)