Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N15
         (253 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0364 - 9457747-9458043,9459815-9459952,9460072-9460141,946...    48   1e-06
06_03_1162 + 28093749-28093851,28093939-28093997,28094691-280947...    27   2.8  
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565...    26   3.7  
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658...    25   6.4  

>02_02_0364 -
           9457747-9458043,9459815-9459952,9460072-9460141,
           9460928-9460995,9462451-9462582
          Length = 234

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 19/31 (61%), Positives = 25/31 (80%)
 Frame = +2

Query: 161 MLVLVLGDLHIPHRCSSLAPKFKKLLLPGRI 253
           +LVL LGDLH+PHR + L  KFK +L+PG+I
Sbjct: 2   VLVLALGDLHVPHRAADLPAKFKSMLVPGKI 32


>06_03_1162 +
           28093749-28093851,28093939-28093997,28094691-28094766,
           28094848-28094919,28095023-28095110,28095230-28095485,
           28095583-28095698,28096064-28096127,28096252-28096354,
           28096446-28096554,28097048-28097234
          Length = 410

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 209 YCIYEGYVDRQVRGPTFWNAI 147
           Y  YEG V+   RGPT W+ +
Sbjct: 10  YYQYEGAVNEGQRGPTIWDTL 30


>03_05_1149 +
           30753463-30754695,30754834-30755017,30755321-30756549,
           30756702-30756816,30757126-30758084
          Length = 1239

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 207 LHL*GICRSPSTRTNILECNINNSCL*STNSLHAKNNITPTGVYRI 70
           +H+ G CR   TR  +  C I       T SL   NNI  TG+ RI
Sbjct: 229 VHVWGHCRD--TRGGMNSCKIAEFQA-GTGSLRIYNNINSTGLQRI 271


>10_02_0195 +
           6578384-6578629,6578710-6579300,6586302-6587512,
           6587593-6587844,6587932-6588042,6588133-6588214,
           6588299-6588382,6588464-6588658
          Length = 923

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 176 LGDLHIPHRCSSLAPKFKKL 235
           LG+ H PH   +  PKFK L
Sbjct: 894 LGEFHDPHSVLATDPKFKNL 913


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,180,275
Number of Sequences: 37544
Number of extensions: 104434
Number of successful extensions: 250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)