Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N14
(215 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 31 0.027
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 25 1.0
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 25 1.4
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr... 25 1.4
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 24 2.4
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 24 2.4
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 24 3.1
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 23 4.1
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 23 4.1
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 23 7.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 23 7.2
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 23 7.2
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 22 9.6
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph... 22 9.6
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 22 9.6
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 22 9.6
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 30.7 bits (66), Expect = 0.027
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 50 MPQNEYIERHQKLYGRRLDY 109
MPQNEYIE + +GRR D+
Sbjct: 1 MPQNEYIEESIRKHGRRFDH 20
Score = 23.8 bits (49), Expect = 3.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +3
Query: 111 RRGNAKKKRVNPIRRAEKA----RKLQGIKAKIYQ 203
R + ++KR R A A +K +GIKAK+YQ
Sbjct: 17 RFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQ 51
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 1.0
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 50 MPQNEYIERHQKL 88
+PQ EY+E+H+KL
Sbjct: 195 LPQTEYLEKHKKL 207
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 1.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 163 FSALLMGFTRFFFAFPLLIIKPS 95
F +L+ GF FFF FP ++ S
Sbjct: 61 FLSLVRGFVCFFFMFPYFVMLKS 83
>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 747
Score = 25.0 bits (52), Expect = 1.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 127 FAFPLLIIKPSAVKLLMAFNIFVLRHCGCLAADLRRHHATL 5
F PL + P + ++ NI + + CG L A HH ++
Sbjct: 235 FQSPLSLETPQLIANMLFSNIQLGQECGTLVAIPTPHHCSI 275
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 128 FCVSSPHNQAVCRKAFDGVQYIRSAALWLLSG 33
FC+S+ ++V + A D + Y RS L + G
Sbjct: 232 FCLSTSTYESVVQAAQDSLLYFRSTLLEIQEG 263
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 24.2 bits (50), Expect = 2.4
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +2
Query: 50 MPQNEYIERHQKL 88
+PQ E++E+H+KL
Sbjct: 196 LPQTEFVEKHKKL 208
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 9 VAWCRRKSAAKQPQCRRTNILNAIK 83
V W R+KS++K P +L+ I+
Sbjct: 2318 VEWNRKKSSSKYPNNEANEVLDIIR 2342
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +1
Query: 13 HGVGVSRPLSNHNAAER 63
+G G S+P++NH + E+
Sbjct: 201 NGAGTSKPVNNHGSIEQ 217
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 122 VSSPHNQAVCRKAFDGVQYIRSAAL 48
V H C++ DG Q+IR+ A+
Sbjct: 786 VCETHETYKCKRCRDGKQFIRAPAM 810
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 45 PQCRRTNILNAIKSFTADGLIM 110
P+ RTN + KSFT + LI+
Sbjct: 587 PESNRTNSSASSKSFTMNDLIL 608
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 173 FTSLLSPSYGVHALLFCVSSP 111
F+S +SP YG+ + + SSP
Sbjct: 1543 FSSAMSPGYGLTSPSYSPSSP 1563
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -2
Query: 112 LIIKPSAVKLLMAFNIFVLRH--CGCLAADLRRHH 14
+I KPS + LM + +RH C CL R H
Sbjct: 615 VISKPSQKRALMKVSDMSIRHGDCVCLFNRYRAQH 649
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 118 PLLIIKPSAVKLLMAFNI 65
PL++I P K+L AFN+
Sbjct: 975 PLVLIDPFEEKVLKAFNM 992
>SPBC15D4.04 |gpt2|gpt,
alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
acetylglucosaminephosphotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 184 IPCSLRAF---SALLMGFTRFFFAFPLLIIKPSAVKLLMAFN 68
+P +R F S + +GF +F+ + I P+++ ++ N
Sbjct: 180 VPSIVRPFLKRSLINLGFLYYFYMAAVAIFCPNSINIIAGVN 221
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 157 LRRLVNYKVLKPRSTNK 207
L+R+V+ K+ KP +NK
Sbjct: 733 LKRIVHEKLCKPNKSNK 749
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 21 RRKSAAKQPQCRRTNILNAIKS 86
+RK++A +PQ R N A KS
Sbjct: 379 KRKNSATRPQARLFNESEAFKS 400
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 824,630
Number of Sequences: 5004
Number of extensions: 12013
Number of successful extensions: 47
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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