Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N14
(215 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1651 - 28395369-28395436,28395524-28395575,28395857-283960... 34 0.018
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 27 2.7
09_01_0144 - 2158924-2158962,2159180-2159315,2159393-2159499,215... 26 3.6
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 26 4.8
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727... 26 4.8
07_01_1214 - 11583510-11583653,11585063-11585148,11585234-115853... 26 4.8
05_04_0290 + 19883904-19885109 26 4.8
02_05_1021 + 33565866-33567431,33568317-33568604 26 4.8
12_01_0478 + 3752617-3753006,3753708-3753780,3753892-3753959,375... 25 6.3
11_01_0057 + 434293-436698 25 6.3
03_01_0370 - 2879469-2879639,2880071-2880172,2881415-2881515,288... 25 6.3
02_05_1214 + 34976814-34979813 25 8.3
01_05_0608 - 23628100-23631486 25 8.3
>07_03_1651 -
28395369-28395436,28395524-28395575,28395857-28396092,
28396362-28396419,28396509-28396577,28396686-28396791,
28397104-28397171,28397266-28397385,28398144-28398231,
28399433-28399534,28399699-28399757,28399866-28400003,
28400222-28400473,28400508-28400593,28401061-28401165,
28402351-28402516
Length = 590
Score = 33.9 bits (74), Expect = 0.018
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2
Query: 53 PQNEYIERHQKLYGRRLDY 109
PQ ++IE HQK +GRRLDY
Sbjct: 333 PQGDHIELHQKRHGRRLDY 351
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = -1
Query: 116 SPHNQAVCRKAFDGVQYIRSAALWLLSGRLTPTPCHPR 3
+P A R DG SA LLS RL P P PR
Sbjct: 50 NPRAAAAPRFMLDGYLLRHSAHFLLLSARLRPPPPPPR 87
>09_01_0144 -
2158924-2158962,2159180-2159315,2159393-2159499,
2159594-2160055,2162755-2162836,2164222-2164346,
2164555-2164623,2164935-2165056,2165823-2165856
Length = 391
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 181 PCSLRAFSALLMGFTRFFFAFP 116
PCS+ A + + F R F+AFP
Sbjct: 331 PCSMCAMALVHQRFKRIFYAFP 352
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = -1
Query: 170 TSLLSPSYGVHALLFCVSSPHNQAVCRKAFDGVQYIRSAALWLLSGRLTPT 18
TSLL P G+ +S P Q V A G + + LWLL PT
Sbjct: 89 TSLLDPEEGIR--FRGLSIPECQKVLPTAIKGGEPLPEGLLWLLLTGKVPT 137
>10_08_0444 +
17971724-17971797,17972119-17972176,17972613-17972708,
17972974-17973000,17973019-17973075,17973604-17973687,
17974304-17974384,17974928-17975071,17975218-17975309,
17975998-17976079,17976818-17977000,17977360-17977438,
17977555-17977613,17978162-17978290,17979188-17979367,
17980312-17980446,17980528-17980602,17980890-17980947,
17981035-17981282,17981594-17981733,17981961-17982132,
17982797-17982887,17983099-17983221,17984951-17985032,
17985715-17985835,17985886-17985915,17986427-17986549
Length = 940
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 155 PSYGVHALLFCVSSPHNQAV 96
P YGVH + FCVS H +
Sbjct: 648 PYYGVHQVHFCVSLYHPDTI 667
>07_01_1214 -
11583510-11583653,11585063-11585148,11585234-11585316,
11585415-11585572,11587083-11587243,11588058-11588279,
11588553-11588677,11589538-11589656,11589961-11590020,
11590292-11590370,11591936-11592100,11592632-11592660,
11593439-11593500,11594724-11594859,11594999-11595161,
11595245-11595384,11597811-11597899,11598914-11599001,
11599558-11599658,11599711-11599859,11600769-11600870,
11601888-11601973,11602064-11602309
Length = 930
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +3
Query: 48 QCRRTNILNAIKSFTADGLIMRRGNAKKKRVNPIR 152
Q R N+ N +K+FT ++++ + PI+
Sbjct: 339 QARGENLFNLVKAFTNSPMLLKENKRSNEAAMPIK 373
>05_04_0290 + 19883904-19885109
Length = 401
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 137 ALLFCVSSPHNQAVCRKAFDGVQYIRSAALW 45
AL+ C S N R+ FDG++ R A LW
Sbjct: 86 ALVLCYSGLSNLPDARRLFDGMRE-RDAVLW 115
>02_05_1021 + 33565866-33567431,33568317-33568604
Length = 617
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 7 GWHGVGVSRPLSNHNAAERIY*TPSKAL 90
G HG GVS +S+ Y TP KAL
Sbjct: 264 GVHGKGVSVRISDGRGGGNAYMTPQKAL 291
>12_01_0478 +
3752617-3753006,3753708-3753780,3753892-3753959,
3754577-3754665,3755108-3755305,3755383-3755527,
3755673-3755840,3756174-3756341,3756527-3756717,
3757128-3757266
Length = 542
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 163 FSALLMGFTRFFFAFPLLIIKPSAVKLLMAFN 68
F LMG R+ F IKP KL+++F+
Sbjct: 461 FPHFLMGHRRYLFGGNARTIKPDKRKLVLSFD 492
>11_01_0057 + 434293-436698
Length = 801
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 154 LLMGFTRFFFAFPLLIIKPSAVKLLMAFNIFVLRHCG 44
+ +G FA PLL+++ S + +L A VLR G
Sbjct: 27 MFLGDEPLRFALPLLLVQVSIILILSAAAHHVLRRLG 63
>03_01_0370 -
2879469-2879639,2880071-2880172,2881415-2881515,
2881788-2882016
Length = 200
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 87 FTADGLIMRRGNAKKKRVNPIRRAEKARKL 176
FT+DGL+ G+ +R+ P + R+L
Sbjct: 89 FTSDGLVQIGGSLVPRRITPSEGLDMGRRL 118
>02_05_1214 + 34976814-34979813
Length = 999
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 124 AFPLLIIKPSAVKLLMAFNIFVLRHCG 44
A+PLL++ PS VK + ++ V CG
Sbjct: 697 AYPLLMLHPSGVKKMGELHLAVRFCCG 723
>01_05_0608 - 23628100-23631486
Length = 1128
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 178 CSLRAFSALLMGFTRFFFAFPLLIIKPSAVKLLMAF 71
CSL + L + +T FP I K S + +L+ F
Sbjct: 357 CSLNSLEELNLEYTNMSGTFPTFIHKMSNLSVLLLF 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,640,215
Number of Sequences: 37544
Number of extensions: 82990
Number of successful extensions: 224
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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