Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_N13
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    29   0.17 
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   1.2  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   1.2  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   1.6  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   2.1  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   2.8  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    25   2.8  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   3.8  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   3.8  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   3.8  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   3.8  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    24   5.0  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    24   6.6  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    24   6.6  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    24   6.6  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    24   6.6  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    23   8.7  

>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 21/84 (25%), Positives = 37/84 (44%)
 Frame = +3

Query: 12  KHSNMRYLVILVLAAVWMVEGNPMILPDNDYFDLGIHDQVLGVFPNLLTDYMKFERSVRS 191
           K+SN+ +  I V      +  N  ILPD+ Y  + +H      +P   T   + ERS   
Sbjct: 679 KYSNVSFEKIDVAERTCTISLNAPILPDDGYAYIRLHVYFPNNYPISATPVFQLERSSAF 738

Query: 192 VGETLHHILHGNDNKHEQDDNSSK 263
             E  +++ +   +  +Q  +S K
Sbjct: 739 NDEQFNYVFNTLTSISDQCISSHK 762


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 3   TRVKHSNMRYLVILVLAAVWMVEGNPMILPDN 98
           TR+  ++  ++++L++  VW + G     PDN
Sbjct: 155 TRLAGTSFTFILMLIILIVWAIVGGIYRAPDN 186


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 159 QLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPELPDTSCWSV 13
           Q  D+ERL     EYR++  R Q    D+    +R   P + D + W+V
Sbjct: 200 QSVDAERL---AEEYREKYGRSQTVVGDTSNVPQRLLLPSVNDPNIWAV 245


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 216 EYGGAFHPRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESS 79
           E    F P F L ++ + + L+D+  L   G     QNS   + SS
Sbjct: 275 ELPNPFVPFFDLDSKPNLSTLQDNASLTSQGSNLSSQNSGLSSSSS 320


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -3

Query: 113 EIKIVVIRQNHRIPFYHPNGSQHQNYQIPHVGV 15
           E+++ + RQN+ +  +HP  S   ++   H G+
Sbjct: 555 ELQLTMFRQNNMLTEFHPYSSNPSDWFTLHHGI 587


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 168 SCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPS 61
           S   + +  R R P  +Y +QN   ++E  +   PS
Sbjct: 164 SARSVSERTRKRSPVSDYEEQNESEKSEEEEGYSPS 199


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = -2

Query: 156 LEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPELP 34
           +E     + P  +  +++   Q   + S +  K++P+PE+P
Sbjct: 210 IESDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPEVP 250


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -3

Query: 149 IRKDSEDLVMNTEIKIVVIRQNHRIPFYHPNG---SQHQN--YQIPHVGVFN 9
           +RK++E+ V +  I  V+   N   PF   N     +H N  + I H   FN
Sbjct: 357 LRKEAEENVNSRVISAVLTGVNRAYPFAEVNSEKFDKHMNTLFAITHTASFN 408


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 171 FERSVRSVGETLHHILHGNDNKHEQDDNSSKAK 269
           F+R    VG+T+ +I    ++  E+D  +S+ K
Sbjct: 571 FQRFGNFVGDTMRYITEEEESSEEEDLTTSRRK 603


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 10/52 (19%), Positives = 27/52 (51%)
 Frame = +3

Query: 147 NLLTDYMKFERSVRSVGETLHHILHGNDNKHEQDDNSSKAKHPAAEIARKGI 302
           ++  DY K+E ++ S   T+ +  +         D+SS++  P ++++ + +
Sbjct: 68  SITDDYGKYENTLVSHSSTILNEPYNESPSSSSSDSSSRSTSPFSQLSSQSL 119


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -2

Query: 207 GAFH-PRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPS-KRQPTPELP 34
           G+F+ P  ++S  ++ +    +     P   Y D+N +  A+SS   LPS    P+   P
Sbjct: 114 GSFNLPNSNMSHSLNGDSTASNSSTLTPNRIYGDRNRQDYAQSSRYTLPSLPSSPSYNCP 173

Query: 33  DT 28
            T
Sbjct: 174 TT 175


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 123 DQVLGVFPNLLTDYMKFERSVRSVGETLHHILHGNDN 233
           + +L VF NL+ +   FE  V    + L  I   N+N
Sbjct: 72  EPILAVFINLIQESAAFEDHVSKFCQALEQIADQNNN 108


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 114 RDQNSRYQAESSDSLLPSKRQPTPELPD 31
           RD  +RY    + S++P+ R+   E PD
Sbjct: 113 RDIQARYGVYGTWSIIPALRETLAEYPD 140


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 86  NHRIPFYHPNGS 51
           NHRIP  HP+G+
Sbjct: 330 NHRIPQLHPDGT 341


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 174 ERSVRSVGETLHHILHGNDNKHEQD 248
           E  + +  E L++ LHG  N ++QD
Sbjct: 91  ENHISATTEDLYNSLHGTYNNYKQD 115


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 96  YQAESSDSLLPSKRQPTPELP 34
           YQA  S+   PS R PTP  P
Sbjct: 312 YQAAQSNISSPSSRFPTPYSP 332


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 107 KIVVIRQNHRIPFYHPN 57
           K+ V+R N ++PF H N
Sbjct: 420 KVTVVRWNPQLPFDHTN 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,458,811
Number of Sequences: 5004
Number of extensions: 28764
Number of successful extensions: 106
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)