Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N12
(273 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 40 5e-05
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 38 3e-04
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 30 0.051
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 29 0.12
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 25 2.5
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 25 2.5
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 24 3.4
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 24 3.4
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 24 4.4
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual 24 4.4
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 24 4.4
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 40.3 bits (90), Expect = 5e-05
Identities = 22/71 (30%), Positives = 30/71 (42%)
Frame = +2
Query: 59 PQTKPEILYTGLFINNEWVKSSDGKSFKTENPATGQVITEVQQXXXXXXXXXXXXXXXXF 238
P K I GLFINN+ V S G K +P+T ++I EV F
Sbjct: 14 PTGKTYIQPVGLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAF 73
Query: 239 KLGSPWRSMDA 271
+ +PWR +
Sbjct: 74 QTDAPWRKFSS 84
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 37.9 bits (84), Expect = 3e-04
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 95 FINNEWVKSSDGKSFKTENPATGQVITEVQQXXXXXXXXXXXXXXXXFK 241
F+ +W+ S + K+F+ +NPATG++I +V FK
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFK 69
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 30.3 bits (65), Expect = 0.051
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 95 FINNEWVKSSDGKSFKTENPATGQVITEV 181
+I +WV ++ GK+F ENP + + V
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPV 55
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 29.1 bits (62), Expect = 0.12
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +2
Query: 89 GLFINNEWVKSSDGKSFKTENPATGQVITEV 181
GL+IN EW KS++ +++T +P+ +VI +V
Sbjct: 22 GLYINGEWHKSAE--TWETVDPSIEEVIAKV 50
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 2.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 106 IIYEQTSIKNFWFSLRCRRGCSKLSFLGLNNF 11
+IYE I+ W ++ K+ ++G++NF
Sbjct: 137 LIYEDVPIEETWQAMEELLETGKVRYIGISNF 168
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 24.6 bits (51), Expect = 2.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 106 IIYEQTSIKNFWFSLRCRRGCSKLSFLGLNNF 11
+IYE+ I+ W ++ K+ +GL+NF
Sbjct: 138 LIYEKNPIEETWKAMEKLLETGKVRHIGLSNF 169
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 24.2 bits (50), Expect = 3.4
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -3
Query: 217 NSFVDISFTSLLDLSDNLTGG--GILRLETLTIRRFYPFIIYEQTSIKNFWFSLRC 56
++F +++F + L ++L G L + + + Y FII +TS +F+ ++C
Sbjct: 154 DTFREVTFLTELGQQEDLLSSRDGEASLRSFDLMK-YDFIITYKTSFYSFYLPIKC 208
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 24.2 bits (50), Expect = 3.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 149 SPS*NSYHPTILPIH 105
SP+ NSYHP++ +H
Sbjct: 306 SPAENSYHPSVESLH 320
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 23.8 bits (49), Expect = 4.4
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 241 FESISGCFNSFVDISFTSLLDLSDNLTGGGILRLETLTIRRFY 113
F +SG + FV T L+ + GG + TL I RF+
Sbjct: 155 FAPLSGIYGRFVVYFCTLLMFTLFQIGGGCAQNIWTLVILRFF 197
>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 23.8 bits (49), Expect = 4.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 17 VQTQKAKFATAAPTPQTKPEILYTGLFINNEWVK-SSDGKSF 139
VQ Q+ +T PTP + E+L+ IN+E DG +F
Sbjct: 66 VQNQQGWISTRLPTPSSSFEVLFQ-FRINSESTSLFGDGLAF 106
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 23.8 bits (49), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 2 HEGKVVQTQKAKFATAAPTPQTK 70
H G ++ K K ATA PTP++K
Sbjct: 116 HYG-ILMGSKGKKATATPTPKSK 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,071,835
Number of Sequences: 5004
Number of extensions: 17549
Number of successful extensions: 50
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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