Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N12
(273 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066... 53 3e-08
01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140... 48 1e-06
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 44 2e-05
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000... 29 0.38
05_05_0357 + 24377989-24378039,24378601-24378632,24378724-243788... 27 1.5
04_04_0154 - 23146445-23146535,23146689-23146795,23146933-231469... 27 2.7
01_06_1198 + 35341375-35341635,35341750-35341953,35342151-353427... 27 2.7
03_06_0497 - 34332310-34334415 26 3.6
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635... 26 4.7
02_04_0612 + 24370446-24373044,24373135-24373541 25 6.3
06_01_0114 - 892599-893070,894115-894457,894896-895151 25 8.3
05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,415... 25 8.3
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 25 8.3
02_01_0124 + 901034-901153,901455-901481,901713-901792,903739-90... 25 8.3
>06_03_0627 +
22903346-22903523,22906010-22906152,22906235-22906618,
22906980-22907069,22907147-22907320,22907414-22907551,
22907719-22907856,22907958-22908019,22908240-22908513
Length = 526
Score = 53.2 bits (122), Expect = 3e-08
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +2
Query: 56 TPQTKPEILYTGLFINNEWVKSSDGKSFKTENPATGQVITEVQQ 187
TP+T PEI YT LFIN +V ++ GK+F+T +P TG VI V +
Sbjct: 36 TPRTTPEIRYTKLFINGRFVDAASGKTFETRDPRTGDVIARVAE 79
>01_05_0545 +
23109920-23110040,23113363-23113505,23113626-23114009,
23114106-23114219,23114310-23114483,23114608-23114745,
23114884-23115021,23115094-23115155,23115268-23115541
Length = 515
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +2
Query: 71 PEILYTGLFINNEWVKSSDGKSFKTENPATGQVITEVQQXXXXXXXXXXXXXXXXFKLGS 250
PEI +T LFIN E+V ++ GK+FKT +P TG V+ + + F+ G
Sbjct: 22 PEIKFTKLFINGEFVDAASGKTFKTRDPRTGDVLAHIAEADKADVDLAVKAAREAFEHGK 81
Query: 251 PWRSM 265
W M
Sbjct: 82 -WPRM 85
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +2
Query: 26 QKAKFATAAPTPQTKP-EILYTGLFINNEWVKSSDGKSFKTENPATGQVITEVQQXXXXX 202
Q+ A A P + P ++ YT L I+ ++V S+ GK+F T +P TG++I V +
Sbjct: 48 QRFSTAAVAEEPISPPVQVNYTQLLIDGKFVDSASGKTFPTLDPRTGELIAHVAEGDAED 107
Query: 203 XXXXXXXXXXXFKLGSPWRSMDA 271
F G PW M A
Sbjct: 108 INRAVHAARKAFDEG-PWPKMTA 129
>01_05_0544 +
23098921-23098953,23099209-23099272,23099942-23100084,
23100246-23100719,23100950-23101123,23101230-23101367,
23101489-23101589,23101910-23102183
Length = 466
Score = 29.5 bits (63), Expect = 0.38
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 128 GKSFKTENPATGQVITEVQQXXXXXXXXXXXXXXXXFKLGSPWRSM 265
GK+F+T +P TG+VI ++ + F G PW M
Sbjct: 33 GKTFETRDPRTGEVIAKIAEGDKADIDLAVKAAREAFDHG-PWPRM 77
>05_05_0357 +
24377989-24378039,24378601-24378632,24378724-24378818,
24379165-24379237,24379804-24379867,24380465-24380732,
24381132-24381202,24382028-24382084,24382302-24382403,
24382544-24382588,24383616-24383693,24384350-24384400,
24384475-24384556,24384883-24384956,24386093-24386144,
24386230-24386288,24386380-24386456,24386692-24386778,
24387011-24387101
Length = 502
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 187 LLDLSDNLTGGGILRLETLTIRRFYPFI 104
LLD D + GG + ++++ FYPFI
Sbjct: 133 LLDTLDQMEGGASIAIDSVAQISFYPFI 160
>04_04_0154 -
23146445-23146535,23146689-23146795,23146933-23146993,
23147070-23147221,23147306-23147383,23147696-23147809,
23147880-23147956,23148128-23148194,23148341-23148406,
23148528-23148651,23148733-23148825,23149446-23149594,
23149681-23149761,23150502-23150644,23150758-23150872
Length = 505
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 89 GLFINNEWVKSSDGKSFKTENPATGQVITEV 181
GLFI W + S G+ NPAT I ++
Sbjct: 11 GLFIGGGWREPSLGRRLPVVNPATEATIGDI 41
>01_06_1198 +
35341375-35341635,35341750-35341953,35342151-35342737,
35342825-35342986,35343096-35343549
Length = 555
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 247 TQFESISGCFNSFVDISFTSLLDLSDNLTGGGILRLETLT 128
T S G F SF SFT LL + GGG+ R + +T
Sbjct: 11 TSANSRLGTF-SFASASFTDLLGGNAGAGGGGVSRYKAMT 49
>03_06_0497 - 34332310-34334415
Length = 701
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 47 AAPTPQTKPEILYTGLFINNEWVKSSDGKSFKTENPATGQVITEVQQ 187
AAP P+T PE L G + + +S D F T P+T ++ T Q
Sbjct: 636 AAPAPETLPEDLECG--VGQFYDESFD--EFVTGFPSTSEITTSTTQ 678
>08_02_1457 + 27260841-27260965,27261126-27261246,27263455-27263543,
27263776-27263860,27263970-27264074,27264446-27264527,
27264573-27264686,27265029-27265330,27265519-27266114,
27266216-27266376,27266489-27266592,27266697-27266856,
27266942-27267105,27267213-27267545,27267640-27267930,
27268276-27268359,27268430-27268563,27268665-27268892,
27268993-27269164,27269263-27269517,27269778-27270047
Length = 1324
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 115 YPFIIYEQTSIKNFWFSL 62
YP I ++ T+ K FWF+L
Sbjct: 1170 YPMIGFQMTATKFFWFAL 1187
>02_04_0612 + 24370446-24373044,24373135-24373541
Length = 1001
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 238 ESISGCFNSFV-DISFTSLLDLSDNLTGGGILRLETL 131
+S++G S + ++SF ++LDL DN G + RL L
Sbjct: 89 QSLTGQIRSSLGNLSFLNILDLGDNNLLGSLPRLGNL 125
>06_01_0114 - 892599-893070,894115-894457,894896-895151
Length = 356
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 2 HEGKVVQTQKAKFATAAPTPQTKPEI 79
H G+ + + TAAP PQ++P++
Sbjct: 129 HRGRNRSRKPVESKTAAPAPQSQPQL 154
>05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,
4154335-4154433,4154461-4157475
Length = 1117
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 214 SFVDISFTSLLDLSDNLTGGGI 149
S + ++ LL+LSDNL GGI
Sbjct: 949 SLLQLTSLHLLNLSDNLLSGGI 970
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 41 ATAAPTPQTKPEILYTGLFINNEWVKSS 124
ATA P T+ + YTG+ WV SS
Sbjct: 264 ATAGAAPLTRVVVNYTGVVERLVWVASS 291
>02_01_0124 +
901034-901153,901455-901481,901713-901792,903739-903811,
904015-904072,904561-904615,905140-905164,905361-905421,
907416-907531,907661-907812,907918-908003,908182-908309,
908451-908501,908774-908860,908964-909033,909351-909407,
909729-909865,910313-910390,910971-911057
Length = 515
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 110 WVKSSDGKSFKTENPATGQ 166
WVK +D SFKTE A +
Sbjct: 108 WVKVADWNSFKTEKKAAAR 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,876,312
Number of Sequences: 37544
Number of extensions: 110726
Number of successful extensions: 274
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -