Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_N12
(273 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12966-1|AAA20615.3| 510|Caenorhabditis elegans Aldehyde dehydr... 67 1e-12
AF106575-1|AAC78174.2| 537|Caenorhabditis elegans Aldehyde dehy... 54 1e-08
Z68760-14|CAA92998.2| 908|Caenorhabditis elegans Hypothetical p... 41 1e-04
Z68748-13|CAA92957.2| 908|Caenorhabditis elegans Hypothetical p... 41 1e-04
U53335-2|AAU87823.1| 190|Caenorhabditis elegans Hypothetical pr... 29 0.59
U61948-7|AAB03148.1| 195|Caenorhabditis elegans Hypothetical pr... 26 4.2
AL590342-2|CAC35859.3| 685|Caenorhabditis elegans Hypothetical ... 26 4.2
AL032622-4|CAA21499.1| 738|Caenorhabditis elegans Y66A7A.5 prot... 26 4.2
U64842-4|AAB37086.2| 306|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z49913-5|CAA90146.1| 404|Caenorhabditis elegans Hypothetical pr... 25 7.3
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 25 7.3
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 25 7.3
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 25 7.3
AF099914-2|AAK68239.1| 71|Caenorhabditis elegans Hypothetical ... 25 9.7
>U12966-1|AAA20615.3| 510|Caenorhabditis elegans Aldehyde
dehydrogenase protein1, isoform a protein.
Length = 510
Score = 67.3 bits (157), Expect = 1e-12
Identities = 31/83 (37%), Positives = 47/83 (56%)
Frame = +2
Query: 23 TQKAKFATAAPTPQTKPEILYTGLFINNEWVKSSDGKSFKTENPATGQVITEVQQXXXXX 202
T +A+ A+ P + + YTG+FINNE+V + GK+F+T NPA G+V+ +V +
Sbjct: 9 TVQARNASGVPPGLSNMKPQYTGIFINNEFVPAKSGKTFETINPANGKVLAQVAEGDKTD 68
Query: 203 XXXXXXXXXXXFKLGSPWRSMDA 271
F++GS WR MDA
Sbjct: 69 VNIAVKAAQNAFRIGSEWRRMDA 91
>AF106575-1|AAC78174.2| 537|Caenorhabditis elegans Aldehyde
dehydrogenase protein 2 protein.
Length = 537
Score = 54.0 bits (124), Expect = 1e-08
Identities = 24/60 (40%), Positives = 34/60 (56%)
Frame = +2
Query: 92 LFINNEWVKSSDGKSFKTENPATGQVITEVQQXXXXXXXXXXXXXXXXFKLGSPWRSMDA 271
LFINNE+V + GK+F+ NPA G+++ +V + FK+GS WR MDA
Sbjct: 59 LFINNEFVDAKSGKTFEFVNPANGKLLAKVAEGNRDDVDIAVEAAKKAFKIGSEWRRMDA 118
>Z68760-14|CAA92998.2| 908|Caenorhabditis elegans Hypothetical
protein F36H1.6 protein.
Length = 908
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +2
Query: 95 FINNEWVKSSDGKSFKTENPATGQVITEVQQXXXXXXXXXXXXXXXXFKLGSPWRSMDA 271
FI+ ++V SSDG++FKT NPAT + I E+ F+ G WR M A
Sbjct: 431 FIDGKFVGSSDGRTFKTINPATEKPICELPLATVADVDRAVRAAKKAFERGE-WRQMSA 488
>Z68748-13|CAA92957.2| 908|Caenorhabditis elegans Hypothetical
protein F36H1.6 protein.
Length = 908
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +2
Query: 95 FINNEWVKSSDGKSFKTENPATGQVITEVQQXXXXXXXXXXXXXXXXFKLGSPWRSMDA 271
FI+ ++V SSDG++FKT NPAT + I E+ F+ G WR M A
Sbjct: 431 FIDGKFVGSSDGRTFKTINPATEKPICELPLATVADVDRAVRAAKKAFERGE-WRQMSA 488
>U53335-2|AAU87823.1| 190|Caenorhabditis elegans Hypothetical
protein C55C3.7 protein.
Length = 190
Score = 28.7 bits (61), Expect = 0.59
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 47 AAPTPQTKPEILYTGLFI-NNEWVKSSDGKSFKTENPATGQVITEVQ 184
+A PQT +TG + N++W ++ D + P TGQ +T+ Q
Sbjct: 71 SACCPQTALMSQWTGWQLQNSQWARTRDCLTVSIGCPCTGQTLTQTQ 117
>U61948-7|AAB03148.1| 195|Caenorhabditis elegans Hypothetical
protein C46A5.8 protein.
Length = 195
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 107 EWVKSSDGKSFKTENPATGQVITE 178
EW K+ D KT+NP+T I E
Sbjct: 109 EWSKTIDTWKIKTQNPSTRDQIIE 132
>AL590342-2|CAC35859.3| 685|Caenorhabditis elegans Hypothetical
protein Y66A7A.5 protein.
Length = 685
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 20 QTQKAKFATAAPTPQTKPEILYTGLFINNE 109
Q +K+KF+ + P+ KPE + + F N+E
Sbjct: 200 QFEKSKFSNSTLEPRMKPEYIESRPFWNSE 229
>AL032622-4|CAA21499.1| 738|Caenorhabditis elegans Y66A7A.5
protein.
Length = 738
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 20 QTQKAKFATAAPTPQTKPEILYTGLFINNE 109
Q +K+KF+ + P+ KPE + + F N+E
Sbjct: 200 QFEKSKFSNSTLEPRMKPEYIESRPFWNSE 229
>U64842-4|AAB37086.2| 306|Caenorhabditis elegans Hypothetical
protein F25B4.7 protein.
Length = 306
Score = 25.4 bits (53), Expect = 5.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 83 YTGLFINNEWVKSSDGKSFKTENPATGQVIT 175
Y GLF +SDGK TE GQV+T
Sbjct: 201 YYGLFDTTAPYMNSDGKMTFTEAFLVGQVVT 231
>Z49913-5|CAA90146.1| 404|Caenorhabditis elegans Hypothetical
protein ZK938.7 protein.
Length = 404
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 103 IYEQTSIKNFWFSLRCRRGCSKLSFLGLNN 14
IYE T + W S +C + KL F+ L N
Sbjct: 57 IYEATEVVRCWDSFKCNQ---KLEFVRLKN 83
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 250 RTQFESISGCFNSFVDISFTSLLDLSDNLTGGGILR 143
R + ESI G F ++I TS+++ S L LR
Sbjct: 40 RRRGESIGGAFTDMINIEPTSIINKSTELLHERFLR 75
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 250 RTQFESISGCFNSFVDISFTSLLDLSDNLTGGGILR 143
R + ESI G F ++I TS+++ S L LR
Sbjct: 18 RRRGESIGGAFTDMINIEPTSIINKSTELLHERFLR 53
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 250 RTQFESISGCFNSFVDISFTSLLDLSDNLTGGGILR 143
R + ESI G F ++I TS+++ S L LR
Sbjct: 40 RRRGESIGGAFTDMINIEPTSIINKSTELLHERFLR 75
>AF099914-2|AAK68239.1| 71|Caenorhabditis elegans Hypothetical
protein C40A11.10 protein.
Length = 71
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 220 FNSFVDISFTSLLDLSDNLTGGGILRLET 134
F F++ SF L SDN+TG + + T
Sbjct: 11 FGKFLNGSFNGSLKRSDNITGSSNMWIST 39
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,791,962
Number of Sequences: 27780
Number of extensions: 93859
Number of successful extensions: 258
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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